Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01686

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01684 and CCNA_01685 are separated by 164 nucleotidesCCNA_01685 and CCNA_01686 are separated by 161 nucleotidesCCNA_01686 and CCNA_01687 overlap by 4 nucleotidesCCNA_01687 and CCNA_01688 overlap by 4 nucleotides CCNA_01684: CCNA_01684 - phenylalanine-4-hydroxylase, at 1,811,466 to 1,812,350 _01684 CCNA_01685: CCNA_01685 - hemimethylated DNA-binding protein yccV, at 1,812,515 to 1,812,844 _01685 CCNA_01686: CCNA_01686 - exopolyphosphatase GppA, at 1,813,006 to 1,814,112 _01686 CCNA_01687: CCNA_01687 - FtsJ-family 23S rRNA methylase, at 1,814,109 to 1,814,819 _01687 CCNA_01688: CCNA_01688 - potassium channel protein, at 1,814,816 to 1,815,859 _01688 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1812.018 kb on - strand, within CCNA_01684at 1812.023 kb on - strand, within CCNA_01684at 1812.112 kb on + strand, within CCNA_01684at 1812.120 kb on - strand, within CCNA_01684at 1812.120 kb on - strand, within CCNA_01684at 1812.159 kb on + strand, within CCNA_01684at 1812.172 kb on - strand, within CCNA_01684at 1812.172 kb on - strand, within CCNA_01684at 1812.174 kb on + strand, within CCNA_01684at 1812.215 kb on - strand, within CCNA_01684at 1812.256 kb on + strand, within CCNA_01684at 1812.266 kb on + strandat 1812.274 kb on - strandat 1812.274 kb on - strandat 1812.277 kb on + strandat 1812.330 kb on + strandat 1812.338 kb on - strandat 1812.356 kb on - strandat 1812.357 kb on + strandat 1812.423 kb on + strandat 1812.526 kb on - strandat 1812.555 kb on - strand, within CCNA_01685at 1812.600 kb on - strand, within CCNA_01685at 1812.631 kb on - strand, within CCNA_01685at 1812.636 kb on - strand, within CCNA_01685at 1812.636 kb on - strand, within CCNA_01685at 1812.651 kb on + strand, within CCNA_01685at 1812.718 kb on + strand, within CCNA_01685at 1812.725 kb on - strand, within CCNA_01685at 1812.731 kb on + strand, within CCNA_01685at 1812.770 kb on - strand, within CCNA_01685at 1812.785 kb on - strand, within CCNA_01685at 1812.859 kb on - strandat 1812.904 kb on + strandat 1812.954 kb on + strandat 1812.985 kb on + strandat 1812.996 kb on + strandat 1813.004 kb on - strandat 1813.004 kb on - strandat 1813.004 kb on - strandat 1813.127 kb on + strand, within CCNA_01686at 1813.127 kb on + strand, within CCNA_01686at 1813.153 kb on + strand, within CCNA_01686at 1813.161 kb on - strand, within CCNA_01686at 1813.184 kb on + strand, within CCNA_01686at 1813.212 kb on + strand, within CCNA_01686at 1813.306 kb on + strand, within CCNA_01686at 1813.308 kb on - strand, within CCNA_01686at 1813.314 kb on - strand, within CCNA_01686at 1813.319 kb on - strand, within CCNA_01686at 1813.342 kb on - strand, within CCNA_01686at 1813.425 kb on + strand, within CCNA_01686at 1813.427 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.497 kb on + strand, within CCNA_01686at 1813.505 kb on - strand, within CCNA_01686at 1813.505 kb on - strand, within CCNA_01686at 1813.505 kb on - strand, within CCNA_01686at 1813.515 kb on - strand, within CCNA_01686at 1813.529 kb on + strand, within CCNA_01686at 1813.585 kb on + strand, within CCNA_01686at 1813.597 kb on + strand, within CCNA_01686at 1813.605 kb on - strand, within CCNA_01686at 1813.627 kb on + strand, within CCNA_01686at 1813.635 kb on + strand, within CCNA_01686at 1813.635 kb on + strand, within CCNA_01686at 1813.643 kb on - strand, within CCNA_01686at 1813.643 kb on - strand, within CCNA_01686at 1813.679 kb on + strand, within CCNA_01686at 1813.683 kb on + strand, within CCNA_01686at 1813.683 kb on + strand, within CCNA_01686at 1813.692 kb on - strand, within CCNA_01686at 1813.731 kb on + strand, within CCNA_01686at 1813.731 kb on + strand, within CCNA_01686at 1813.731 kb on + strand, within CCNA_01686at 1813.736 kb on + strand, within CCNA_01686at 1813.739 kb on - strand, within CCNA_01686at 1813.741 kb on + strand, within CCNA_01686at 1813.766 kb on + strand, within CCNA_01686at 1813.885 kb on - strand, within CCNA_01686at 1813.900 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.956 kb on + strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.964 kb on - strand, within CCNA_01686at 1813.966 kb on + strand, within CCNA_01686at 1813.966 kb on + strand, within CCNA_01686at 1814.012 kb on + strandat 1814.013 kb on + strandat 1814.020 kb on - strandat 1814.036 kb on - strandat 1814.036 kb on - strandat 1814.810 kb on - strandat 1814.820 kb on + strandat 1814.820 kb on + strandat 1814.820 kb on + strandat 1814.828 kb on - strandat 1814.828 kb on - strandat 1814.834 kb on - strandat 1814.857 kb on + strandat 1814.872 kb on + strandat 1814.923 kb on - strand, within CCNA_01688at 1814.965 kb on + strand, within CCNA_01688at 1814.967 kb on - strand, within CCNA_01688at 1814.972 kb on - strand, within CCNA_01688at 1814.994 kb on + strand, within CCNA_01688at 1814.997 kb on - strand, within CCNA_01688at 1815.053 kb on + strand, within CCNA_01688at 1815.063 kb on - strand, within CCNA_01688at 1815.094 kb on + strand, within CCNA_01688at 1815.102 kb on - strand, within CCNA_01688at 1815.102 kb on - strand, within CCNA_01688

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,812,018 - CCNA_01684 0.62 +1.8
1,812,023 - CCNA_01684 0.63 +2.9
1,812,112 + CCNA_01684 0.73 -1.6
1,812,120 - CCNA_01684 0.74 +3.0
1,812,120 - CCNA_01684 0.74 +2.3
1,812,159 + CCNA_01684 0.78 -0.9
1,812,172 - CCNA_01684 0.80 +3.1
1,812,172 - CCNA_01684 0.80 +1.8
1,812,174 + CCNA_01684 0.80 -0.4
1,812,215 - CCNA_01684 0.85 +2.2
1,812,256 + CCNA_01684 0.89 +0.7
1,812,266 + +0.3
1,812,274 - +2.0
1,812,274 - +2.4
1,812,277 + +0.1
1,812,330 + +1.2
1,812,338 - +1.9
1,812,356 - +2.0
1,812,357 + +0.6
1,812,423 + -0.7
1,812,526 - +0.4
1,812,555 - CCNA_01685 0.12 +0.1
1,812,600 - CCNA_01685 0.26 +1.3
1,812,631 - CCNA_01685 0.35 +1.1
1,812,636 - CCNA_01685 0.37 +2.8
1,812,636 - CCNA_01685 0.37 +1.7
1,812,651 + CCNA_01685 0.41 -0.3
1,812,718 + CCNA_01685 0.62 -1.7
1,812,725 - CCNA_01685 0.64 +1.1
1,812,731 + CCNA_01685 0.65 -0.6
1,812,770 - CCNA_01685 0.77 +1.7
1,812,785 - CCNA_01685 0.82 +0.5
1,812,859 - +0.1
1,812,904 + +0.3
1,812,954 + +2.7
1,812,985 + +1.6
1,812,996 + +0.5
1,813,004 - +0.8
1,813,004 - -0.2
1,813,004 - -1.6
1,813,127 + CCNA_01686 0.11 -1.2
1,813,127 + CCNA_01686 0.11 +0.3
1,813,153 + CCNA_01686 0.13 +0.2
1,813,161 - CCNA_01686 0.14 -2.6
1,813,184 + CCNA_01686 0.16 -0.6
1,813,212 + CCNA_01686 0.19 -0.4
1,813,306 + CCNA_01686 0.27 -1.3
1,813,308 - CCNA_01686 0.27 -1.6
1,813,314 - CCNA_01686 0.28 -0.0
1,813,319 - CCNA_01686 0.28 -0.9
1,813,342 - CCNA_01686 0.30 -0.9
1,813,425 + CCNA_01686 0.38 +0.0
1,813,427 + CCNA_01686 0.38 -2.1
1,813,497 + CCNA_01686 0.44 -1.8
1,813,497 + CCNA_01686 0.44 -1.9
1,813,497 + CCNA_01686 0.44 +0.6
1,813,497 + CCNA_01686 0.44 -1.3
1,813,497 + CCNA_01686 0.44 -0.4
1,813,497 + CCNA_01686 0.44 -1.1
1,813,497 + CCNA_01686 0.44 +0.5
1,813,497 + CCNA_01686 0.44 -0.9
1,813,497 + CCNA_01686 0.44 -1.4
1,813,497 + CCNA_01686 0.44 -0.3
1,813,497 + CCNA_01686 0.44 -1.8
1,813,497 + CCNA_01686 0.44 -0.0
1,813,505 - CCNA_01686 0.45 -0.6
1,813,505 - CCNA_01686 0.45 -1.4
1,813,505 - CCNA_01686 0.45 -0.0
1,813,515 - CCNA_01686 0.46 -0.8
1,813,529 + CCNA_01686 0.47 -1.3
1,813,585 + CCNA_01686 0.52 -0.2
1,813,597 + CCNA_01686 0.53 -0.6
1,813,605 - CCNA_01686 0.54 +0.3
1,813,627 + CCNA_01686 0.56 +1.1
1,813,635 + CCNA_01686 0.57 -0.9
1,813,635 + CCNA_01686 0.57 -1.5
1,813,643 - CCNA_01686 0.58 -0.7
1,813,643 - CCNA_01686 0.58 +1.1
1,813,679 + CCNA_01686 0.61 -0.4
1,813,683 + CCNA_01686 0.61 -0.3
1,813,683 + CCNA_01686 0.61 +0.1
1,813,692 - CCNA_01686 0.62 -1.1
1,813,731 + CCNA_01686 0.65 +1.1
1,813,731 + CCNA_01686 0.65 -1.6
1,813,731 + CCNA_01686 0.65 +0.8
1,813,736 + CCNA_01686 0.66 +0.6
1,813,739 - CCNA_01686 0.66 -1.9
1,813,741 + CCNA_01686 0.66 +0.3
1,813,766 + CCNA_01686 0.69 -0.0
1,813,885 - CCNA_01686 0.79 -1.0
1,813,900 + CCNA_01686 0.81 -0.3
1,813,956 + CCNA_01686 0.86 -0.4
1,813,956 + CCNA_01686 0.86 -0.1
1,813,956 + CCNA_01686 0.86 +0.1
1,813,956 + CCNA_01686 0.86 -1.8
1,813,956 + CCNA_01686 0.86 -1.0
1,813,964 - CCNA_01686 0.87 +0.1
1,813,964 - CCNA_01686 0.87 -0.3
1,813,964 - CCNA_01686 0.87 -0.7
1,813,964 - CCNA_01686 0.87 -1.7
1,813,964 - CCNA_01686 0.87 -0.2
1,813,966 + CCNA_01686 0.87 +0.3
1,813,966 + CCNA_01686 0.87 +0.8
1,814,012 + -0.3
1,814,013 + +0.1
1,814,020 - -0.9
1,814,036 - -0.9
1,814,036 - -0.4
1,814,810 - -0.3
1,814,820 + +2.0
1,814,820 + +1.6
1,814,820 + +1.0
1,814,828 - +0.2
1,814,828 - -0.4
1,814,834 - -0.3
1,814,857 + +1.6
1,814,872 + +1.1
1,814,923 - CCNA_01688 0.10 -1.3
1,814,965 + CCNA_01688 0.14 -0.1
1,814,967 - CCNA_01688 0.14 -0.4
1,814,972 - CCNA_01688 0.15 +1.1
1,814,994 + CCNA_01688 0.17 +0.4
1,814,997 - CCNA_01688 0.17 -0.9
1,815,053 + CCNA_01688 0.23 -0.1
1,815,063 - CCNA_01688 0.24 +1.3
1,815,094 + CCNA_01688 0.27 +0.4
1,815,102 - CCNA_01688 0.27 -0.2
1,815,102 - CCNA_01688 0.27 -0.5

Or see this region's nucleotide sequence