Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25460

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
6,179,065	-		CA265_RS25450	0.67	-1.9
6,179,111	+		CA265_RS25450	0.80	-2.3
6,179,111	+		CA265_RS25450	0.80	-0.9
6,179,213	+				+0.2
6,179,272	+				+1.7
6,179,292	+				-0.4
6,179,299	+				-1.8
6,179,299	+				+0.2
6,179,301	+				-2.5
6,179,301	+				+0.2
6,179,355	+		CA265_RS25455	0.15	-0.6
6,179,356	-		CA265_RS25455	0.16	-1.0
6,179,385	+		CA265_RS25455	0.21	-0.2
6,179,385	+		CA265_RS25455	0.21	-0.1
6,179,422	+		CA265_RS25455	0.28	+1.2
6,179,433	+		CA265_RS25455	0.30	-2.1
6,179,434	-		CA265_RS25455	0.30	-2.1
6,179,464	-		CA265_RS25455	0.36	-1.6
6,179,489	-		CA265_RS25455	0.41	-1.6
6,179,489	-		CA265_RS25455	0.41	+3.0
6,179,535	+		CA265_RS25455	0.49	-2.2
6,179,545	+		CA265_RS25455	0.51	-0.2
6,179,582	-		CA265_RS25455	0.58	+0.4
6,179,601	+		CA265_RS25455	0.62	+0.1
6,179,645	-		CA265_RS25455	0.70	-1.9
6,179,660	-		CA265_RS25455	0.73	+0.6
6,179,670	+		CA265_RS25455	0.75	-1.1
6,179,773	+				-0.1
6,179,791	+				+1.7
6,179,792	-				+0.0
6,179,792	-				-0.1
6,179,891	+				+0.8
6,179,941	+				-1.6
6,179,942	-				-1.2
6,179,958	-				-1.6
6,179,958	-				-2.9
6,179,962	+				+0.8
6,180,085	+				-2.2
6,180,086	-				+1.1
6,180,089	+				+0.7
6,180,090	-				-0.9
6,180,119	+				-0.2
6,180,119	+				-1.5
6,180,165	-		CA265_RS25460	0.13	+0.4
6,180,165	-		CA265_RS25460	0.13	+2.8
6,180,169	-		CA265_RS25460	0.13	-1.3
6,180,266	-		CA265_RS25460	0.19	+0.3
6,180,320	-		CA265_RS25460	0.23	+1.1
6,180,420	+		CA265_RS25460	0.29	+0.6
6,180,482	+		CA265_RS25460	0.33	-2.3
6,180,484	+		CA265_RS25460	0.33	+0.7
6,180,586	+		CA265_RS25460	0.40	+1.5
6,180,686	-		CA265_RS25460	0.47	-0.2
6,180,731	-		CA265_RS25460	0.49	-0.3
6,180,788	-		CA265_RS25460	0.53	+0.1
6,180,888	+		CA265_RS25460	0.60	-2.0
6,180,946	+		CA265_RS25460	0.63	-2.1
6,180,947	-		CA265_RS25460	0.63	+0.2
6,181,006	-		CA265_RS25460	0.67	+0.2
6,181,054	-		CA265_RS25460	0.70	+0.1
6,181,054	-		CA265_RS25460	0.70	+0.4
6,181,175	+		CA265_RS25460	0.78	+0.1
6,181,205	+		CA265_RS25460	0.80	-0.1
6,181,258	+		CA265_RS25460	0.83	+0.2
6,181,258	+		CA265_RS25460	0.83	-0.7
6,181,258	+		CA265_RS25460	0.83	+0.7
6,181,259	-		CA265_RS25460	0.84	-2.0
6,181,300	+		CA265_RS25460	0.86	-1.4
6,181,420	+				-1.5
6,181,496	-				+0.8
6,181,508	+				-2.1
6,181,603	-				-0.2
6,181,669	-				+0.6
6,181,706	-				+0.7
6,181,706	-				+0.4
6,181,725	+				-2.6
6,181,726	-				-0.7
6,181,784	-				-2.9
6,181,784	-				+0.1
6,181,784	-				-1.3
6,181,843	-				+0.3
6,181,855	+				+0.1
6,181,926	+				-1.0
6,181,926	+				-2.4
6,181,942	-				+0.4
6,182,032	+				+0.9