Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25445

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
6,176,455	+		CA265_RS25435	0.75	-1.3
6,176,459	+		CA265_RS25435	0.76	+0.2
6,176,513	+		CA265_RS25435	0.86	+0.7
6,176,525	+		CA265_RS25435	0.88	-0.6
6,176,540	+				-1.7
6,176,545	+				-1.2
6,176,603	-				-0.6
6,176,760	+		CA265_RS25440	0.20	+1.5
6,176,909	+		CA265_RS25440	0.41	-0.8
6,176,956	-		CA265_RS25440	0.47	+1.1
6,176,989	-		CA265_RS25440	0.51	+0.3
6,176,989	-		CA265_RS25440	0.51	+1.1
6,177,026	-		CA265_RS25440	0.57	-0.8
6,177,028	-		CA265_RS25440	0.57	-0.2
6,177,092	+		CA265_RS25440	0.65	-0.1
6,177,093	-		CA265_RS25440	0.66	+0.8
6,177,110	+		CA265_RS25440	0.68	+0.9
6,177,173	+		CA265_RS25440	0.76	+0.8
6,177,195	+		CA265_RS25440	0.79	-0.2
6,177,220	+		CA265_RS25440	0.83	-1.3
6,177,255	+		CA265_RS25440	0.88	-0.6
6,177,256	-		CA265_RS25440	0.88	-0.3
6,177,286	+				+1.1
6,177,344	+				+1.0
6,177,385	+				-0.3
6,177,386	-				+0.8
6,177,386	-				+0.5
6,177,435	+				+0.7
6,177,435	+				-0.6
6,177,441	+				+0.5
6,177,441	+				+1.3
6,177,521	+				+1.6
6,177,522	-				-3.9
6,177,524	+				+0.7
6,177,525	-				-2.3
6,177,525	-				-0.1
6,177,636	-		CA265_RS25445	0.16	-1.6
6,177,644	+		CA265_RS25445	0.17	+0.6
6,177,703	+		CA265_RS25445	0.22	+2.2
6,177,724	+		CA265_RS25445	0.24	+0.4
6,177,752	-		CA265_RS25445	0.26	-1.9
6,177,758	+		CA265_RS25445	0.26	+0.7
6,177,788	-		CA265_RS25445	0.29	+0.3
6,177,788	-		CA265_RS25445	0.29	-0.9
6,177,797	-		CA265_RS25445	0.30	-1.3
6,177,896	+		CA265_RS25445	0.38	+0.9
6,177,962	-		CA265_RS25445	0.43	+0.6
6,177,985	-		CA265_RS25445	0.45	-0.0
6,178,036	-		CA265_RS25445	0.49	-0.3
6,178,085	+		CA265_RS25445	0.53	-0.8
6,178,085	+		CA265_RS25445	0.53	-0.9
6,178,086	-		CA265_RS25445	0.53	+0.3
6,178,116	-		CA265_RS25445	0.55	-0.6
6,178,220	-		CA265_RS25445	0.64	-0.9
6,178,274	+		CA265_RS25445	0.68	-0.1
6,178,318	-		CA265_RS25445	0.72	-1.3
6,178,387	+		CA265_RS25445	0.77	+0.6
6,178,439	-		CA265_RS25445	0.82	-2.0
6,178,453	+		CA265_RS25445	0.83	-0.8
6,178,480	+		CA265_RS25445	0.85	+1.4
6,178,529	+		CA265_RS25445	0.89	+0.7
6,178,583	-				+1.2
6,178,600	+				-0.8
6,178,600	+				-2.6
6,178,601	-				-0.4
6,178,604	-				-0.9
6,178,624	+				+1.6
6,178,657	-				+0.7
6,178,675	-				+1.0
6,178,694	-				+0.8
6,178,707	+				+0.3
6,178,726	+				-3.8
6,178,726	+				+1.0
6,178,728	+				+0.6
6,178,729	-				+0.2
6,178,729	-				+0.8
6,178,734	-				-1.3
6,178,735	+				+1.0
6,178,805	-				+0.6
6,178,806	+				+2.2
6,178,806	+				-0.6
6,178,807	-				-0.8
6,178,807	-				+2.2
6,178,812	-				-1.6
6,178,812	-				+1.2
6,178,817	-				+2.0
6,178,820	-				+0.7
6,178,824	+				+1.2
6,178,825	-				-0.1
6,179,065	-		CA265_RS25450	0.67	-1.9
6,179,111	+		CA265_RS25450	0.80	-2.3
6,179,111	+		CA265_RS25450	0.80	-0.9
6,179,213	+				+0.2
6,179,272	+				+1.7
6,179,292	+				-0.4
6,179,299	+				-1.8
6,179,299	+				+0.2
6,179,301	+				-2.5
6,179,301	+				+0.2
6,179,355	+		CA265_RS25455	0.15	-0.6
6,179,356	-		CA265_RS25455	0.16	-1.0
6,179,385	+		CA265_RS25455	0.21	-0.2
6,179,385	+		CA265_RS25455	0.21	-0.1
6,179,422	+		CA265_RS25455	0.28	+1.2
6,179,433	+		CA265_RS25455	0.30	-2.1
6,179,434	-		CA265_RS25455	0.30	-2.1
6,179,464	-		CA265_RS25455	0.36	-1.6
6,179,489	-		CA265_RS25455	0.41	-1.6
6,179,489	-		CA265_RS25455	0.41	+3.0
6,179,535	+		CA265_RS25455	0.49	-2.2
6,179,545	+		CA265_RS25455	0.51	-0.2
6,179,582	-		CA265_RS25455	0.58	+0.4
6,179,601	+		CA265_RS25455	0.62	+0.1
6,179,645	-		CA265_RS25455	0.70	-1.9
6,179,660	-		CA265_RS25455	0.73	+0.6