Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25215

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
6,136,268	-				-0.1
6,136,284	+				-0.8
6,136,298	-				-0.3
6,136,307	+				+1.1
6,136,328	+				-0.4
6,136,329	-				+1.1
6,136,329	-				+2.0
6,136,329	-				-1.2
6,136,422	+				+0.5
6,136,435	-				+0.3
6,136,475	+		CA265_RS25210	0.14	+0.3
6,136,475	+		CA265_RS25210	0.14	+0.1
6,136,476	-		CA265_RS25210	0.14	+0.6
6,136,476	-		CA265_RS25210	0.14	+0.8
6,136,476	-		CA265_RS25210	0.14	-0.6
6,136,482	+		CA265_RS25210	0.15	+1.0
6,136,483	-		CA265_RS25210	0.16	-0.4
6,136,525	-		CA265_RS25210	0.23	+1.8
6,136,564	+		CA265_RS25210	0.29	-1.8
6,136,609	+		CA265_RS25210	0.37	-1.5
6,136,609	+		CA265_RS25210	0.37	+2.4
6,136,665	+		CA265_RS25210	0.47	+0.3
6,136,724	-		CA265_RS25210	0.57	+2.6
6,136,767	+		CA265_RS25210	0.64	-3.1
6,136,784	-		CA265_RS25210	0.67	-0.9
6,136,786	+		CA265_RS25210	0.67	+0.1
6,136,787	-		CA265_RS25210	0.67	+0.8
6,136,812	+		CA265_RS25210	0.72	-0.2
6,136,877	+		CA265_RS25210	0.83	+0.7
6,136,878	-		CA265_RS25210	0.83	-0.1
6,137,108	+				+1.6
6,137,135	-				-0.8
6,137,148	+				-0.0
6,137,148	+				+0.1
6,137,197	+				-0.8
6,137,198	-				-2.1
6,137,229	+				+0.2
6,137,230	-				+0.4
6,137,230	-				+0.3
6,137,230	-				-0.5
6,137,509	-		CA265_RS25215	0.41	-1.5
6,137,561	-		CA265_RS25215	0.47	-0.0
6,137,561	-		CA265_RS25215	0.47	-1.7
6,137,610	+		CA265_RS25215	0.54	-0.6
6,137,706	+		CA265_RS25215	0.66	+1.9
6,137,706	+		CA265_RS25215	0.66	-2.6
6,137,707	-		CA265_RS25215	0.66	-2.4
6,137,715	+		CA265_RS25215	0.67	-0.8
6,137,723	+		CA265_RS25215	0.68	-1.9
6,137,886	+		CA265_RS25215	0.89	-0.1
6,137,932	+				-1.7
6,137,933	-				+0.7
6,137,933	-				-0.1
6,137,937	-				-3.5
6,137,986	-				-1.2
6,137,994	-				-0.2
6,138,011	+				-1.2
6,138,054	+				+0.8
6,138,120	-				+0.1
6,138,156	-				-1.4
6,138,161	-				+0.8
6,138,275	+		CA265_RS25220	0.15	-1.0
6,138,275	+		CA265_RS25220	0.15	+1.2
6,138,291	-		CA265_RS25220	0.16	-1.3
6,138,314	+		CA265_RS25220	0.18	+0.1
6,138,324	+		CA265_RS25220	0.19	-1.1
6,138,486	-		CA265_RS25220	0.31	-1.2
6,138,519	+		CA265_RS25220	0.33	-0.0
6,138,520	-		CA265_RS25220	0.34	+1.7
6,138,520	-		CA265_RS25220	0.34	+0.4
6,138,543	+		CA265_RS25220	0.35	+0.9
6,138,581	+		CA265_RS25220	0.38	-1.3
6,138,584	+		CA265_RS25220	0.38	+0.4
6,138,597	+		CA265_RS25220	0.39	+0.1
6,138,597	+		CA265_RS25220	0.39	+0.8
6,138,598	-		CA265_RS25220	0.39	-1.8
6,138,611	+		CA265_RS25220	0.40	+0.1
6,138,615	-		CA265_RS25220	0.41	+0.8
6,138,631	-		CA265_RS25220	0.42	+0.1
6,138,656	+		CA265_RS25220	0.44	+0.2
6,138,707	+		CA265_RS25220	0.48	-0.2
6,138,708	-		CA265_RS25220	0.48	-1.1
6,138,912	+		CA265_RS25220	0.63	+1.7
6,138,912	+		CA265_RS25220	0.63	-0.0
6,138,913	-		CA265_RS25220	0.63	-0.2