Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25205

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
6,134,721	+				-2.4
6,134,721	+				-0.8
6,134,724	-				-0.3
6,134,727	+				-0.8
6,134,742	+				+1.2
6,134,743	-				-0.2
6,134,822	+		CA265_RS25195	0.18	+1.8
6,134,832	-		CA265_RS25195	0.21	-0.0
6,134,835	+		CA265_RS25195	0.22	-0.6
6,134,835	+		CA265_RS25195	0.22	+0.6
6,134,836	-		CA265_RS25195	0.22	-1.9
6,134,889	+		CA265_RS25195	0.39	+1.0
6,134,889	+		CA265_RS25195	0.39	+1.1
6,134,910	+		CA265_RS25195	0.45	-0.4
6,134,911	-		CA265_RS25195	0.46	-0.2
6,134,934	+		CA265_RS25195	0.53	-1.9
6,134,935	-		CA265_RS25195	0.53	-3.3
6,134,936	+		CA265_RS25195	0.53	+0.6
6,134,936	+		CA265_RS25195	0.53	+0.7
6,134,937	-		CA265_RS25195	0.54	-2.3
6,134,959	+		CA265_RS25195	0.61	+1.0
6,134,960	-		CA265_RS25195	0.61	+1.5
6,134,960	-		CA265_RS25195	0.61	-0.8
6,134,973	+		CA265_RS25195	0.65	+1.1
6,135,113	+				-2.5
6,135,114	-				-3.1
6,135,151	+		CA265_RS25200	0.13	+0.7
6,135,151	+		CA265_RS25200	0.13	+0.5
6,135,151	+		CA265_RS25200	0.13	-0.6
6,135,152	-		CA265_RS25200	0.13	-1.6
6,135,152	-		CA265_RS25200	0.13	-1.4
6,135,164	+		CA265_RS25200	0.15	-0.2
6,135,244	-		CA265_RS25200	0.32	+2.2
6,135,267	-		CA265_RS25200	0.37	+0.8
6,135,272	+		CA265_RS25200	0.38	+0.4
6,135,277	+		CA265_RS25200	0.39	+1.1
6,135,295	-		CA265_RS25200	0.43	+0.4
6,135,419	-		CA265_RS25200	0.69	-0.8
6,135,458	+		CA265_RS25200	0.77	-2.3
6,135,458	+		CA265_RS25200	0.77	-0.4
6,135,460	+		CA265_RS25200	0.77	+0.1
6,135,515	+		CA265_RS25200	0.89	-0.0
6,135,576	+				-0.6
6,135,583	-				-3.2
6,135,594	+				+1.9
6,135,604	+				+0.1
6,135,646	+				+0.8
6,135,659	+				-0.9
6,135,668	-		CA265_RS25205	0.10	+0.7
6,135,694	+		CA265_RS25205	0.16	+0.6
6,135,736	-		CA265_RS25205	0.25	-0.2
6,135,740	+		CA265_RS25205	0.26	-2.6
6,135,740	+		CA265_RS25205	0.26	-2.0
6,135,748	-		CA265_RS25205	0.28	-1.2
6,135,846	+		CA265_RS25205	0.50	+1.5
6,135,993	+		CA265_RS25205	0.82	-1.0
6,135,994	-		CA265_RS25205	0.82	-1.2
6,136,029	-				-0.6
6,136,032	-				-1.4
6,136,045	-				+0.8
6,136,047	-				-1.3
6,136,125	+				-0.4
6,136,125	+				+0.5
6,136,127	+				-1.1
6,136,127	+				+1.3
6,136,128	-				+1.7
6,136,155	+				+0.1
6,136,158	+				+1.5
6,136,268	-				-0.1
6,136,284	+				-0.8
6,136,298	-				-0.3
6,136,307	+				+1.1
6,136,328	+				-0.4
6,136,329	-				+1.1
6,136,329	-				+2.0
6,136,329	-				-1.2
6,136,422	+				+0.5
6,136,435	-				+0.3
6,136,475	+		CA265_RS25210	0.14	+0.3
6,136,475	+		CA265_RS25210	0.14	+0.1
6,136,476	-		CA265_RS25210	0.14	+0.6
6,136,476	-		CA265_RS25210	0.14	+0.8
6,136,476	-		CA265_RS25210	0.14	-0.6
6,136,482	+		CA265_RS25210	0.15	+1.0
6,136,483	-		CA265_RS25210	0.16	-0.4
6,136,525	-		CA265_RS25210	0.23	+1.8
6,136,564	+		CA265_RS25210	0.29	-1.8
6,136,609	+		CA265_RS25210	0.37	-1.5
6,136,609	+		CA265_RS25210	0.37	+2.4
6,136,665	+		CA265_RS25210	0.47	+0.3
6,136,724	-		CA265_RS25210	0.57	+2.6
6,136,767	+		CA265_RS25210	0.64	-3.1
6,136,784	-		CA265_RS25210	0.67	-0.9
6,136,786	+		CA265_RS25210	0.67	+0.1
6,136,787	-		CA265_RS25210	0.67	+0.8
6,136,812	+		CA265_RS25210	0.72	-0.2
6,136,877	+		CA265_RS25210	0.83	+0.7
6,136,878	-		CA265_RS25210	0.83	-0.1