Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24485

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
5,960,857	+		CA265_RS24480	0.24	+0.8
5,960,889	+		CA265_RS24480	0.30	+1.2
5,960,910	-		CA265_RS24480	0.33	-0.5
5,960,971	-		CA265_RS24480	0.43	+0.7
5,961,012	-		CA265_RS24480	0.50	+0.9
5,961,199	-		CA265_RS24480	0.82	-0.4
5,961,298	+				+0.5
5,961,299	-				+0.3
5,961,303	-				-0.9
5,961,303	-				+1.7
5,961,307	+				-0.8
5,961,309	-				-1.9
5,961,331	+				-0.1
5,961,331	+				-0.9
5,961,332	-				+1.2
5,961,377	-				+1.2
5,961,459	-				+2.2
5,961,463	-				+1.1
5,961,506	-				+0.2
5,961,514	-				-2.7
5,961,727	-				-0.9
5,961,777	+				-2.0
5,961,777	+				+0.1
5,961,803	+				+2.4
5,961,842	-		CA265_RS24485	0.10	+0.3
5,961,847	+		CA265_RS24485	0.11	-2.6
5,961,848	-		CA265_RS24485	0.11	-1.8
5,961,868	+		CA265_RS24485	0.14	+0.7
5,961,868	+		CA265_RS24485	0.14	+0.7
5,961,869	-		CA265_RS24485	0.14	+0.2
5,961,870	+		CA265_RS24485	0.14	-0.1
5,961,871	-		CA265_RS24485	0.14	-0.7
5,961,877	+		CA265_RS24485	0.15	+0.6
5,961,880	-		CA265_RS24485	0.16	+0.5
5,961,880	-		CA265_RS24485	0.16	-0.2
5,961,973	+		CA265_RS24485	0.30	+1.4
5,962,006	-		CA265_RS24485	0.35	-1.7
5,962,036	+		CA265_RS24485	0.39	+1.5
5,962,043	+		CA265_RS24485	0.40	+0.5
5,962,044	-		CA265_RS24485	0.41	+0.7
5,962,091	+		CA265_RS24485	0.48	+0.6
5,962,092	-		CA265_RS24485	0.48	+1.9
5,962,098	+		CA265_RS24485	0.49	+1.5
5,962,099	-		CA265_RS24485	0.49	-1.4
5,962,104	-		CA265_RS24485	0.50	-0.2
5,962,112	-		CA265_RS24485	0.51	-1.9
5,962,170	-		CA265_RS24485	0.60	-0.4
5,962,216	+		CA265_RS24485	0.67	+0.9
5,962,217	-		CA265_RS24485	0.67	+0.4
5,962,221	-		CA265_RS24485	0.67	-1.1
5,962,226	+		CA265_RS24485	0.68	-0.6
5,962,226	+		CA265_RS24485	0.68	+1.8
5,962,232	-		CA265_RS24485	0.69	-0.6
5,962,292	+		CA265_RS24485	0.78	-1.7
5,962,292	+		CA265_RS24485	0.78	+1.8
5,962,293	-		CA265_RS24485	0.78	+2.8
5,962,325	+		CA265_RS24485	0.83	+0.3
5,962,353	-		CA265_RS24485	0.87	-1.0
5,962,369	+		CA265_RS24485	0.90	-2.6
5,962,474	-				+2.1
5,962,503	+				-3.0
5,962,525	+				-2.7
5,962,527	+				-1.2
5,962,527	+				+0.5
5,962,527	+				-0.9
5,962,654	+				+1.3
5,962,659	-				+0.7
5,962,659	-				-1.2
5,962,702	-				-0.4
5,962,703	+				+2.1
5,962,704	-				-1.6
5,962,704	-				-0.0
5,962,709	-				+0.8
5,962,758	-				-0.9
5,962,770	+				-2.1
5,962,814	+				-3.1
5,962,814	+				+0.8
5,962,814	+				-0.2
5,962,852	+		CA265_RS24490	0.19	+0.7
5,962,860	+		CA265_RS24490	0.21	+0.4
5,962,865	-		CA265_RS24490	0.22	-2.3
5,962,865	-		CA265_RS24490	0.22	+1.0
5,962,910	+		CA265_RS24490	0.33	+0.5
5,962,919	-		CA265_RS24490	0.35	+1.9
5,962,923	-		CA265_RS24490	0.36	-0.0
5,963,012	-		CA265_RS24490	0.57	+0.1
5,963,012	-		CA265_RS24490	0.57	+0.4
5,963,049	+		CA265_RS24490	0.66	-0.8
5,963,050	-				+0.8
5,963,218	+				-1.3
5,963,218	+				-0.7
5,963,280	+				+2.0
5,963,281	-				-0.7
5,963,337	-				-1.1
5,963,348	+				-0.4
5,963,371	+				-0.8
5,963,372	-				-2.8
5,963,378	+				+0.8