Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24160

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
5,884,369	+		CA265_RS24155	0.68	-1.1
5,884,408	-		CA265_RS24155	0.71	+1.4
5,884,428	+		CA265_RS24155	0.72	-1.1
5,884,455	+		CA265_RS24155	0.74	+0.7
5,884,455	+		CA265_RS24155	0.74	+1.2
5,884,455	+		CA265_RS24155	0.74	-1.2
5,884,456	-		CA265_RS24155	0.74	+0.6
5,884,456	-		CA265_RS24155	0.74	-0.7
5,884,456	-		CA265_RS24155	0.74	-3.4
5,884,456	-		CA265_RS24155	0.74	-1.1
5,884,457	+		CA265_RS24155	0.74	-1.8
5,884,563	-		CA265_RS24155	0.81	-0.6
5,884,585	+		CA265_RS24155	0.83	-2.1
5,884,593	+		CA265_RS24155	0.83	-0.6
5,884,599	+		CA265_RS24155	0.83	-1.8
5,884,599	+		CA265_RS24155	0.83	-1.0
5,884,666	+		CA265_RS24155	0.88	-2.8
5,884,666	+		CA265_RS24155	0.88	-2.4
5,884,666	+		CA265_RS24155	0.88	-1.3
5,884,686	+		CA265_RS24155	0.89	+0.2
5,884,686	+		CA265_RS24155	0.89	+0.8
5,884,686	+		CA265_RS24155	0.89	-1.3
5,884,687	-		CA265_RS24155	0.89	-1.7
5,884,687	-		CA265_RS24155	0.89	+0.4
5,884,833	-				-2.1
5,884,874	-				-2.7
5,885,069	+				+2.5
5,885,098	+				-2.3
5,885,100	+				-1.9
5,885,113	-				+1.0
5,885,139	+				+0.4
5,885,155	-				-1.5
5,885,157	-				-1.0
5,885,167	+				-0.9
5,885,209	+				-1.8
5,885,224	-				+0.7
5,885,239	+				+0.2
5,885,278	-				-0.4
5,885,334	+				-1.6
5,885,366	+				-0.1
5,885,367	-				+0.2
5,885,376	+				-3.1
5,885,376	+				-1.2
5,885,377	-				-2.6
5,885,377	-				-1.9
5,885,377	-				-0.5
5,885,473	+		CA265_RS24160	0.14	-0.6
5,885,474	-		CA265_RS24160	0.14	-1.6
5,885,551	-				+0.4
5,885,570	-		CA265_RS24160	0.26	-0.0
5,885,572	-		CA265_RS24160	0.26	-0.4
5,885,572	-		CA265_RS24160	0.26	-1.7
5,885,572	-		CA265_RS24160	0.26	+0.7
5,885,572	-		CA265_RS24160	0.26	+0.6
5,885,657	+		CA265_RS24160	0.36	-0.2
5,885,771	-		CA265_RS24160	0.50	-0.3
5,885,916	-		CA265_RS24160	0.68	+1.2
5,885,969	-		CA265_RS24160	0.74	+0.6
5,886,001	+		CA265_RS24160	0.78	+0.0
5,886,002	-		CA265_RS24160	0.78	+0.5
5,886,165	+				-0.2
5,886,169	+				-2.3
5,886,274	-		CA265_RS24165	0.15	-1.4
5,886,311	-		CA265_RS24165	0.21	-0.6
5,886,338	+		CA265_RS24165	0.25	-0.5
5,886,349	-		CA265_RS24165	0.27	-1.4
5,886,447	-		CA265_RS24165	0.42	-0.5
5,886,459	-		CA265_RS24165	0.43	-1.1
5,886,497	-		CA265_RS24165	0.49	-0.5
5,886,505	+		CA265_RS24165	0.50	-1.7
5,886,506	-		CA265_RS24165	0.51	+0.0
5,886,507	+		CA265_RS24165	0.51	-0.1
5,886,536	+		CA265_RS24165	0.55	+0.2
5,886,579	+		CA265_RS24165	0.62	+0.4
5,886,580	-		CA265_RS24165	0.62	-0.1
5,886,597	+		CA265_RS24165	0.65	+0.6
5,886,652	+		CA265_RS24165	0.73	-2.8
5,886,652	+		CA265_RS24165	0.73	-0.3
5,886,653	-		CA265_RS24165	0.73	-2.7
5,886,735	+		CA265_RS24165	0.86	-1.3
5,886,776	+				+0.1
5,886,918	-				+1.1
5,886,971	-				-3.1
5,886,987	-				-2.3
5,886,987	-				+0.9
5,886,995	-				-0.6
5,886,995	-				+1.4
5,887,022	-				+0.3
5,887,022	-				-0.0
5,887,050	-				+0.4
5,887,170	-		CA265_RS24170	0.19	+0.9