Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22075

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
5,425,234	+				-1.5
5,425,235	-				-1.0
5,425,249	-				-1.0
5,425,292	+				+0.7
5,425,299	-				-1.5
5,425,331	+				+0.5
5,425,332	-				+0.2
5,425,494	+		CA265_RS22070	0.15	-0.8
5,425,496	+		CA265_RS22070	0.16	-1.5
5,425,505	+		CA265_RS22070	0.20	-2.8
5,425,546	+		CA265_RS22070	0.41	-2.1
5,425,549	-		CA265_RS22070	0.42	+2.7
5,425,560	+		CA265_RS22070	0.48	-3.6
5,425,631	+		CA265_RS22070	0.84	+0.0
5,425,631	+		CA265_RS22070	0.84	-1.5
5,425,633	+		CA265_RS22070	0.85	-2.6
5,425,633	+		CA265_RS22070	0.85	+0.3
5,425,661	-				+0.9
5,425,666	+				-1.9
5,425,666	+				-0.8
5,425,691	-				-0.2
5,425,699	+				+0.8
5,425,764	+				+2.2
5,425,785	-				-2.8
5,425,785	-				+1.2
5,425,805	-				-1.0
5,425,891	+				-3.3
5,425,892	-				-1.5
5,425,997	+				+1.1
5,425,998	-				+1.4
5,426,012	+				-1.0
5,426,026	+				+0.6
5,426,032	-				-2.1
5,426,079	+				-1.0
5,426,080	-				+0.8
5,426,108	+				+1.3
5,426,126	-				-2.9
5,426,126	-				+0.8
5,426,126	-				+1.1
5,426,128	-				-1.5
5,426,162	+				+5.0
5,426,193	-				-0.8
5,426,193	-				-2.3
5,426,268	+		CA265_RS22075	0.20	+0.7
5,426,280	+		CA265_RS22075	0.23	-1.5
5,426,281	-		CA265_RS22075	0.24	+0.7
5,426,325	+		CA265_RS22075	0.34	-1.9
5,426,326	-		CA265_RS22075	0.34	+2.0
5,426,326	-		CA265_RS22075	0.34	+0.1
5,426,326	-		CA265_RS22075	0.34	-2.2
5,426,326	-		CA265_RS22075	0.34	+1.6
5,426,327	+		CA265_RS22075	0.35	-0.9
5,426,416	-		CA265_RS22075	0.56	-0.6
5,426,424	+		CA265_RS22075	0.58	-1.0
5,426,460	+		CA265_RS22075	0.66	-1.3
5,426,460	+		CA265_RS22075	0.66	-2.2
5,426,461	-		CA265_RS22075	0.66	-0.7
5,426,540	+				+3.5
5,426,608	+				+1.5
5,426,672	+				-1.7
5,426,672	+				+0.5
5,426,677	-				-0.5
5,426,749	-				+4.5
5,426,751	+				-2.3
5,426,751	+				+2.5
5,426,762	-				-1.1
5,426,818	+		CA265_RS22080	0.21	+1.0
5,426,854	-		CA265_RS22080	0.30	-0.8
5,426,896	-		CA265_RS22080	0.40	+0.7
5,426,955	+		CA265_RS22080	0.54	-1.2
5,427,042	+		CA265_RS22080	0.75	-2.5
5,427,150	+				+1.0
5,427,258	+				-0.2
5,427,383	+				+0.0
5,427,395	-				+0.7
5,427,422	-				+0.8
5,427,464	+				+0.3
5,427,486	-				-0.1
5,427,486	-				-1.0