Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22065

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
5,424,257	+				+2.5
5,424,258	-				-0.3
5,424,259	+				-2.0
5,424,313	+				-3.0
5,424,356	+				-1.7
5,424,356	+				-0.6
5,424,357	-				+0.9
5,424,380	-				-1.3
5,424,380	-				-2.2
5,424,393	-				+2.5
5,424,457	-				-1.8
5,424,499	-				-1.2
5,424,614	+				+1.0
5,424,614	+				-2.7
5,424,643	+				+1.5
5,424,644	-				-1.8
5,424,657	+				+0.7
5,424,666	-				-1.8
5,424,672	+				-0.7
5,424,673	-				+0.8
5,424,724	-		CA265_RS22065	0.12	+0.6
5,424,767	+		CA265_RS22065	0.23	-1.8
5,424,872	+		CA265_RS22065	0.48	-1.2
5,424,873	-		CA265_RS22065	0.48	-0.0
5,424,882	-		CA265_RS22065	0.50	+0.9
5,424,895	-		CA265_RS22065	0.53	-1.5
5,424,969	-		CA265_RS22065	0.71	-0.9
5,424,983	-		CA265_RS22065	0.74	+0.5
5,424,983	-		CA265_RS22065	0.74	-2.6
5,424,983	-		CA265_RS22065	0.74	-0.6
5,424,987	-		CA265_RS22065	0.75	-2.0
5,424,997	-		CA265_RS22065	0.78	+0.8
5,425,044	-		CA265_RS22065	0.89	-1.2
5,425,050	-				-0.8
5,425,050	-				-1.6
5,425,234	+				-1.5
5,425,235	-				-1.0
5,425,249	-				-1.0
5,425,292	+				+0.7
5,425,299	-				-1.5
5,425,331	+				+0.5
5,425,332	-				+0.2
5,425,494	+		CA265_RS22070	0.15	-0.8
5,425,496	+		CA265_RS22070	0.16	-1.5
5,425,505	+		CA265_RS22070	0.20	-2.8
5,425,546	+		CA265_RS22070	0.41	-2.1
5,425,549	-		CA265_RS22070	0.42	+2.7
5,425,560	+		CA265_RS22070	0.48	-3.6
5,425,631	+		CA265_RS22070	0.84	+0.0
5,425,631	+		CA265_RS22070	0.84	-1.5
5,425,633	+		CA265_RS22070	0.85	-2.6
5,425,633	+		CA265_RS22070	0.85	+0.3
5,425,661	-				+0.9
5,425,666	+				-1.9
5,425,666	+				-0.8
5,425,691	-				-0.2
5,425,699	+				+0.8
5,425,764	+				+2.2
5,425,785	-				-2.8
5,425,785	-				+1.2
5,425,805	-				-1.0
5,425,891	+				-3.3
5,425,892	-				-1.5
5,425,997	+				+1.1
5,425,998	-				+1.4
5,426,012	+				-1.0
5,426,026	+				+0.6
5,426,032	-				-2.1
5,426,079	+				-1.0
5,426,080	-				+0.8