Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18425

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
4,582,574	+		CA265_RS18410	0.81	-0.1
4,582,575	-		CA265_RS18410	0.81	-0.3
4,582,580	+		CA265_RS18410	0.81	-3.1
4,582,580	+		CA265_RS18410	0.81	-0.4
4,582,581	-		CA265_RS18410	0.81	-3.6
4,582,581	-		CA265_RS18410	0.81	+1.6
4,582,601	+		CA265_RS18410	0.82	+0.7
4,582,651	+		CA265_RS18410	0.85	-1.6
4,582,652	-		CA265_RS18410	0.85	-0.6
4,582,718	+		CA265_RS18410	0.89	+1.7
4,582,746	-				-1.5
4,582,781	+				-0.7
4,582,786	+				+0.4
4,582,815	-				-2.8
4,582,823	-				+0.8
4,582,840	+				+1.0
4,582,841	-				-0.4
4,582,880	+				-0.8
4,582,895	+				+0.9
4,582,960	+		CA265_RS18415	0.19	-2.9
4,582,961	-		CA265_RS18415	0.19	-3.0
4,582,980	+		CA265_RS18415	0.25	-0.6
4,582,981	-		CA265_RS18415	0.25	+0.1
4,583,018	-		CA265_RS18415	0.36	+1.4
4,583,061	+		CA265_RS18415	0.48	+0.6
4,583,095	-		CA265_RS18415	0.58	+1.0
4,583,099	-		CA265_RS18415	0.59	+0.7
4,583,117	+		CA265_RS18415	0.65	+1.3
4,583,160	-		CA265_RS18415	0.77	+0.2
4,583,160	-		CA265_RS18415	0.77	+2.2
4,583,160	-		CA265_RS18415	0.77	+0.1
4,583,171	+		CA265_RS18415	0.80	+1.1
4,583,172	-		CA265_RS18415	0.81	-0.5
4,583,262	-		CA265_RS18420	0.10	+1.0
4,583,267	+		CA265_RS18420	0.12	+0.1
4,583,268	-		CA265_RS18420	0.13	+3.2
4,583,290	+		CA265_RS18420	0.22	-0.3
4,583,290	+		CA265_RS18420	0.22	+0.6
4,583,292	+		CA265_RS18420	0.23	+1.3
4,583,292	+		CA265_RS18420	0.23	-0.1
4,583,297	+		CA265_RS18420	0.25	-0.2
4,583,297	+		CA265_RS18420	0.25	+2.7
4,583,435	+		CA265_RS18420	0.83	+0.6
4,583,435	+		CA265_RS18420	0.83	-0.6
4,583,453	+				-0.1
4,583,480	-				-0.5
4,583,501	+				-1.0
4,583,554	-				-0.7
4,583,554	-				-2.1
4,583,651	-		CA265_RS18425	0.24	+0.9
4,583,667	-		CA265_RS18425	0.27	-0.6
4,583,758	+		CA265_RS18425	0.42	-0.2
4,583,758	+		CA265_RS18425	0.42	+1.1
4,583,758	+		CA265_RS18425	0.42	+0.7
4,583,759	-		CA265_RS18425	0.42	+1.4
4,583,759	-		CA265_RS18425	0.42	+1.7
4,583,760	+		CA265_RS18425	0.43	-0.6
4,583,761	-		CA265_RS18425	0.43	+1.4
4,583,761	-		CA265_RS18425	0.43	+1.4
4,583,765	-		CA265_RS18425	0.44	+0.7
4,583,912	+		CA265_RS18425	0.69	-1.2
4,583,913	-		CA265_RS18425	0.69	-3.3
4,584,093	+				+1.0
4,584,129	-				+1.3
4,584,203	+				-1.0
4,584,203	+				-2.6
4,584,269	-				+0.7
4,584,287	-				-2.4
4,584,291	-				-1.3
4,584,294	+				-0.2
4,584,295	-				-0.9
4,584,320	+				+0.3
4,584,333	+				-0.2
4,584,394	+				+1.1
4,584,394	+				+0.3
4,584,460	+				+0.6
4,584,507	-				-0.7
4,584,507	-				-0.6
4,584,508	+				-1.8
4,584,508	+				+1.4
4,584,528	+				-0.3
4,584,532	+				-1.3
4,584,535	+				-2.9
4,584,643	-				+1.9
4,584,687	+				-1.2
4,584,741	+				-0.1
4,584,742	-				-2.3
4,584,742	-				+0.8
4,584,742	-				-0.5
4,584,788	+				-0.6
4,584,791	+				+0.9
4,584,814	-				+0.0
4,584,938	-		CA265_RS18430	0.15	-0.2