Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18115

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
4,521,222	-		CA265_RS18110	0.55	+0.3
4,521,299	+		CA265_RS18110	0.59	-0.9
4,521,331	+		CA265_RS18110	0.61	-0.4
4,521,331	+		CA265_RS18110	0.61	+0.4
4,521,419	+		CA265_RS18110	0.65	+0.7
4,521,419	+		CA265_RS18110	0.65	+1.6
4,521,419	+		CA265_RS18110	0.65	+1.8
4,521,420	-		CA265_RS18110	0.66	-3.1
4,521,481	-		CA265_RS18110	0.69	-1.4
4,521,544	-		CA265_RS18110	0.72	-1.2
4,521,558	+		CA265_RS18110	0.73	-1.9
4,521,583	+		CA265_RS18110	0.75	+1.8
4,521,681	-		CA265_RS18110	0.80	+0.7
4,521,742	+		CA265_RS18110	0.83	+0.1
4,521,766	+		CA265_RS18110	0.85	+0.8
4,521,767	-		CA265_RS18110	0.85	-0.9
4,521,837	+		CA265_RS18110	0.89	-2.1
4,522,042	-				+0.2
4,522,048	+				-1.6
4,522,090	-				-1.2
4,522,090	-				+1.5
4,522,106	-				-1.8
4,522,144	+				-2.5
4,522,148	-				+0.4
4,522,152	-				-2.3
4,522,155	-				+1.4
4,522,211	+				-1.1
4,522,236	+				-0.8
4,522,237	-				-0.5
4,522,240	-				+1.2
4,522,277	-		CA265_RS18115	0.14	+0.7
4,522,284	-		CA265_RS18115	0.15	+1.8
4,522,284	-		CA265_RS18115	0.15	-1.9
4,522,294	+		CA265_RS18115	0.16	+1.7
4,522,392	-		CA265_RS18115	0.26	-2.3
4,522,394	+		CA265_RS18115	0.27	-0.4
4,522,451	-		CA265_RS18115	0.33	+0.5
4,522,451	-		CA265_RS18115	0.33	+0.7
4,522,451	-		CA265_RS18115	0.33	+1.3
4,522,452	+		CA265_RS18115	0.33	+0.7
4,522,452	+		CA265_RS18115	0.33	+1.3
4,522,452	+		CA265_RS18115	0.33	-1.5
4,522,453	-		CA265_RS18115	0.33	-1.9
4,522,457	-		CA265_RS18115	0.34	+0.6
4,522,457	-		CA265_RS18115	0.34	+0.5
4,522,461	+		CA265_RS18115	0.34	+0.6
4,522,462	-		CA265_RS18115	0.34	+2.6
4,522,528	+		CA265_RS18115	0.41	-1.8
4,522,548	+		CA265_RS18115	0.43	+0.3
4,522,553	-		CA265_RS18115	0.44	-2.9
4,522,683	-		CA265_RS18115	0.58	+1.2
4,522,683	-		CA265_RS18115	0.58	+0.4
4,522,718	-		CA265_RS18115	0.62	+1.6
4,522,720	+		CA265_RS18115	0.62	-1.6
4,522,721	-		CA265_RS18115	0.62	-2.8
4,522,761	+		CA265_RS18115	0.67	+1.0
4,522,775	-		CA265_RS18115	0.68	+1.0
4,522,888	-		CA265_RS18115	0.81	+1.5
4,522,899	+		CA265_RS18115	0.82	+0.9
4,522,920	+		CA265_RS18115	0.84	-1.9
4,522,964	-		CA265_RS18115	0.89	+1.4
4,522,995	+				+0.9
4,523,027	-				-0.0
4,523,040	+				+0.6
4,523,050	+				+0.3
4,523,084	-				+0.7
4,523,158	+				-1.7
4,523,158	+				-1.1
4,523,158	+				-0.2
4,523,167	+				-0.3
4,523,177	+				-1.1
4,523,178	-				-1.6
4,523,251	+		CA265_RS18120	0.12	-0.5
4,523,264	-		CA265_RS18120	0.13	-1.0
4,523,266	-		CA265_RS18120	0.13	-1.9
4,523,273	+		CA265_RS18120	0.13	-0.2
4,523,351	+		CA265_RS18120	0.18	-0.5
4,523,405	-		CA265_RS18120	0.22	+1.0
4,523,468	-		CA265_RS18120	0.26	+0.4
4,523,560	+		CA265_RS18120	0.32	-0.2
4,523,594	-		CA265_RS18120	0.34	+1.3
4,523,622	-		CA265_RS18120	0.36	+0.6
4,523,692	-		CA265_RS18120	0.40	+0.5
4,523,700	-		CA265_RS18120	0.41	-0.4
4,523,732	-		CA265_RS18120	0.43	-2.3
4,523,735	+		CA265_RS18120	0.43	+0.8
4,523,736	-		CA265_RS18120	0.43	+0.0
4,523,774	-		CA265_RS18120	0.46	-0.1
4,523,776	-		CA265_RS18120	0.46	-1.1
4,523,806	+		CA265_RS18120	0.48	-0.2
4,523,807	-		CA265_RS18120	0.48	+2.2
4,523,824	+		CA265_RS18120	0.49	-1.4
4,523,824	+		CA265_RS18120	0.49	+1.0
4,523,825	-		CA265_RS18120	0.49	+2.7
4,523,873	-		CA265_RS18120	0.52	+1.8
4,523,874	+		CA265_RS18120	0.52	+0.9
4,523,875	-		CA265_RS18120	0.52	+0.8
4,523,902	+		CA265_RS18120	0.54	+0.8
4,523,902	+		CA265_RS18120	0.54	+0.9
4,523,998	+		CA265_RS18120	0.60	+1.2
4,524,026	-		CA265_RS18120	0.62	+0.6
4,524,026	-		CA265_RS18120	0.62	+0.9
4,524,064	-		CA265_RS18120	0.65	+0.7
4,524,064	-		CA265_RS18120	0.65	-0.4