Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17910

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
4,477,919	+				-1.9
4,477,920	-				+1.1
4,477,923	-				+0.1
4,477,952	+				-2.4
4,477,953	-				-1.0
4,477,953	-				-1.2
4,477,984	-				-0.6
4,478,037	+				+1.4
4,478,038	-				-0.2
4,478,058	-		CA265_RS17905	0.11	-0.7
4,478,071	-		CA265_RS17905	0.12	+0.7
4,478,137	+		CA265_RS17905	0.20	-0.8
4,478,138	-		CA265_RS17905	0.20	-2.2
4,478,179	-		CA265_RS17905	0.25	+1.1
4,478,190	-		CA265_RS17905	0.26	-0.9
4,478,190	-		CA265_RS17905	0.26	-2.1
4,478,193	+		CA265_RS17905	0.27	-1.8
4,478,194	-		CA265_RS17905	0.27	+3.3
4,478,194	-		CA265_RS17905	0.27	-0.4
4,478,226	+		CA265_RS17905	0.30	-0.3
4,478,226	+		CA265_RS17905	0.30	-0.4
4,478,257	-		CA265_RS17905	0.34	-0.8
4,478,378	+		CA265_RS17905	0.48	+0.3
4,478,431	-		CA265_RS17905	0.54	+1.5
4,478,484	-		CA265_RS17905	0.60	-1.5
4,478,489	-		CA265_RS17905	0.61	+0.1
4,478,556	-		CA265_RS17905	0.69	+1.1
4,478,557	+		CA265_RS17905	0.69	+0.3
4,478,558	-		CA265_RS17905	0.69	+1.7
4,478,558	-		CA265_RS17905	0.69	+0.5
4,478,558	-		CA265_RS17905	0.69	+1.3
4,478,588	+		CA265_RS17905	0.72	+0.5
4,478,677	-		CA265_RS17905	0.83	+0.5
4,478,697	-		CA265_RS17905	0.85	-2.4
4,478,707	+		CA265_RS17905	0.86	+1.2
4,478,707	+		CA265_RS17905	0.86	-1.1
4,478,708	-		CA265_RS17905	0.86	-0.2
4,478,708	-		CA265_RS17905	0.86	-1.9
4,478,720	-		CA265_RS17905	0.88	-2.8
4,478,756	+				+0.5
4,478,803	-				+0.1
4,478,809	+				-0.4
4,478,810	-				-0.2
4,478,812	+				+1.6
4,478,919	+				-0.2
4,478,931	-				+0.8
4,478,931	-				-0.5
4,478,961	-				+0.8
4,478,971	+				-0.5
4,478,971	+				-1.0
4,478,972	-				+0.5
4,478,972	-				-0.0
4,478,993	+				-0.9
4,478,994	-				-2.1
4,478,994	-				+0.3
4,478,994	-				-1.0
4,478,997	+		CA265_RS17910	0.10	-0.8
4,479,047	+		CA265_RS17910	0.15	-1.4
4,479,114	-		CA265_RS17910	0.21	-0.2
4,479,124	-		CA265_RS17910	0.22	+0.7
4,479,124	-		CA265_RS17910	0.22	-1.5
4,479,193	-		CA265_RS17910	0.28	+0.9
4,479,330	+		CA265_RS17910	0.41	+1.4
4,479,337	-		CA265_RS17910	0.42	+1.2
4,479,337	-		CA265_RS17910	0.42	+0.1
4,479,337	-		CA265_RS17910	0.42	-1.8
4,479,348	-		CA265_RS17910	0.43	+0.9
4,479,447	+		CA265_RS17910	0.52	-1.4
4,479,479	+		CA265_RS17910	0.55	+3.9
4,479,480	-		CA265_RS17910	0.55	+0.5
4,479,538	+		CA265_RS17910	0.60	-2.4
4,479,538	+		CA265_RS17910	0.60	+0.9
4,479,539	-		CA265_RS17910	0.60	-2.1
4,479,560	+		CA265_RS17910	0.62	-0.3
4,479,596	+		CA265_RS17910	0.65	+0.9
4,479,602	+		CA265_RS17910	0.66	-1.4
4,479,637	+		CA265_RS17910	0.69	-0.7
4,479,637	+		CA265_RS17910	0.69	+1.7
4,479,638	-		CA265_RS17910	0.69	-0.5
4,479,658	-		CA265_RS17910	0.71	+0.5
4,479,756	+		CA265_RS17910	0.80	+1.4
4,479,756	+		CA265_RS17910	0.80	-0.4
4,479,757	-		CA265_RS17910	0.80	-2.4
4,479,790	+		CA265_RS17910	0.83	-0.2
4,479,790	+				+2.6
4,479,790	+		CA265_RS17910	0.83	+1.6
4,479,814	+		CA265_RS17910	0.86	+0.1
4,479,815	-		CA265_RS17910	0.86	-1.6
4,479,815	-		CA265_RS17910	0.86	+0.5
4,479,837	+		CA265_RS17910	0.88	+0.8
4,479,852	-		CA265_RS17910	0.89	+0.3
4,479,862	+				+0.5
4,479,919	+				-0.6
4,479,957	-				-0.9
4,479,966	-				-3.2
4,479,968	-				-1.8
4,480,008	+				+0.7
4,480,008	+				-3.2
4,480,061	-		CA265_RS17915	0.20	+0.4
4,480,104	-		CA265_RS17915	0.29	-1.7
4,480,140	+		CA265_RS17915	0.36	-0.0
4,480,141	-		CA265_RS17915	0.37	+2.0
4,480,143	-		CA265_RS17915	0.37	+0.0
4,480,276	+		CA265_RS17915	0.65	+0.5
4,480,451	+				+1.3
4,480,452	-				+0.8
4,480,456	+				+1.7
4,480,485	+				-0.7
4,480,551	+				+0.7
4,480,559	+				-0.6
4,480,593	+				-0.8
4,480,615	-		CA265_RS17920	0.12	+0.8
4,480,662	+		CA265_RS17920	0.18	-0.9
4,480,662	+		CA265_RS17920	0.18	+1.2
4,480,663	-		CA265_RS17920	0.18	-2.3
4,480,683	+		CA265_RS17920	0.20	-1.1
4,480,685	+				+0.3
4,480,686	-		CA265_RS17920	0.21	+2.3
4,480,686	-		CA265_RS17920	0.21	-0.7
4,480,686	-		CA265_RS17920	0.21	-2.1
4,480,725	-		CA265_RS17920	0.25	-1.3
4,480,796	+		CA265_RS17920	0.34	-1.5
4,480,797	-		CA265_RS17920	0.34	-1.0
4,480,801	-		CA265_RS17920	0.34	-0.8
4,480,818	+		CA265_RS17920	0.36	+0.3
4,480,827	+		CA265_RS17920	0.38	-0.9
4,480,837	-		CA265_RS17920	0.39	-2.2
4,480,931	+		CA265_RS17920	0.50	-0.6
4,480,932	+		CA265_RS17920	0.50	+0.4
4,480,934	+		CA265_RS17920	0.50	-2.2
4,480,958	-		CA265_RS17920	0.53	-0.4