Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15620

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
3,930,592	+		CA265_RS15615	0.35	+1.9
3,930,624	-		CA265_RS15615	0.38	+1.4
3,930,660	+		CA265_RS15615	0.41	-0.2
3,930,731	-		CA265_RS15615	0.48	-0.9
3,930,736	+		CA265_RS15615	0.48	-1.0
3,930,915	-		CA265_RS15615	0.65	-1.6
3,930,944	+		CA265_RS15615	0.68	-1.1
3,930,945	-		CA265_RS15615	0.68	-1.2
3,930,975	+		CA265_RS15615	0.70	-1.8
3,930,976	-		CA265_RS15615	0.71	-0.7
3,931,131	-		CA265_RS15615	0.85	+0.7
3,931,131	-		CA265_RS15615	0.85	+0.5
3,931,165	+		CA265_RS15615	0.88	-0.7
3,931,293	+				+0.8
3,931,314	+				+0.5
3,931,315	-				+1.4
3,931,334	-				-1.2
3,931,334	-				+0.5
3,931,334	-				+0.3
3,931,347	+				+0.8
3,931,561	+				+0.9
3,931,580	+				+0.3
3,931,584	+				-2.0
3,931,585	-				-2.3
3,931,654	+				-0.0
3,931,670	+				+1.4
3,931,719	-				+0.2
3,931,849	+		CA265_RS15620	0.11	+0.7
3,931,915	-		CA265_RS15620	0.14	+0.0
3,931,915	-		CA265_RS15620	0.14	+0.2
3,931,927	-		CA265_RS15620	0.14	-2.6
3,931,963	+		CA265_RS15620	0.15	-1.3
3,931,965	+		CA265_RS15620	0.15	-1.3
3,932,072	+		CA265_RS15620	0.19	-1.5
3,932,076	-		CA265_RS15620	0.20	+1.3
3,932,159	-		CA265_RS15620	0.23	+0.1
3,932,189	+		CA265_RS15620	0.24	+0.5
3,932,226	-		CA265_RS15620	0.25	-1.2
3,932,252	+		CA265_RS15620	0.26	+2.1
3,932,285	+		CA265_RS15620	0.27	-0.2
3,932,306	+		CA265_RS15620	0.28	+0.2
3,932,306	+		CA265_RS15620	0.28	-0.1
3,932,306	+		CA265_RS15620	0.28	-0.3
3,932,331	-		CA265_RS15620	0.29	+0.8
3,932,362	+		CA265_RS15620	0.30	+1.3
3,932,367	+		CA265_RS15620	0.30	+0.4
3,932,368	-		CA265_RS15620	0.30	-0.2
3,932,470	+		CA265_RS15620	0.34	+1.5
3,932,471	-		CA265_RS15620	0.34	-0.9
3,932,494	+		CA265_RS15620	0.35	+1.7
3,932,577	-		CA265_RS15620	0.38	+0.7
3,932,607	+		CA265_RS15620	0.39	-1.8
3,932,608	-		CA265_RS15620	0.39	-1.6
3,932,608	-		CA265_RS15620	0.39	-0.2
3,932,643	-		CA265_RS15620	0.41	-0.1
3,932,718	+		CA265_RS15620	0.44	-1.3
3,932,769	-		CA265_RS15620	0.45	-2.9
3,932,769	-		CA265_RS15620	0.45	+0.4
3,932,808	-		CA265_RS15620	0.47	+0.7
3,932,812	-		CA265_RS15620	0.47	+1.5
3,932,816	-		CA265_RS15620	0.47	-1.9
3,932,869	+		CA265_RS15620	0.49	-1.3
3,932,930	+		CA265_RS15620	0.52	+1.1
3,932,931	-		CA265_RS15620	0.52	+0.1
3,932,931	-		CA265_RS15620	0.52	+0.4
3,933,025	+		CA265_RS15620	0.55	+0.5
3,933,025	+		CA265_RS15620	0.55	-0.7
3,933,039	-		CA265_RS15620	0.56	-0.5
3,933,056	-		CA265_RS15620	0.56	-2.6
3,933,065	+		CA265_RS15620	0.57	+0.6
3,933,065	+		CA265_RS15620	0.57	-1.8
3,933,066	-		CA265_RS15620	0.57	+2.9
3,933,069	+		CA265_RS15620	0.57	+3.1
3,933,070	-		CA265_RS15620	0.57	-3.6
3,933,131	+		CA265_RS15620	0.59	+0.9
3,933,132	-		CA265_RS15620	0.59	-0.0
3,933,192	+		CA265_RS15620	0.61	-0.1
3,933,197	+		CA265_RS15620	0.62	-0.1
3,933,250	+		CA265_RS15620	0.63	+1.2
3,933,251	-		CA265_RS15620	0.64	+1.0
3,933,252	+		CA265_RS15620	0.64	+0.4
3,933,276	-		CA265_RS15620	0.64	-0.6
3,933,322	+		CA265_RS15620	0.66	-0.3
3,933,365	-		CA265_RS15620	0.68	+0.3
3,933,397	+		CA265_RS15620	0.69	-2.6
3,933,399	+		CA265_RS15620	0.69	+1.0
3,933,399	+		CA265_RS15620	0.69	-0.0
3,933,400	-		CA265_RS15620	0.69	+2.3
3,933,481	+		CA265_RS15620	0.72	-3.5
3,933,553	+		CA265_RS15620	0.75	+1.2
3,933,580	+		CA265_RS15620	0.76	+0.4
3,933,625	-		CA265_RS15620	0.78	+0.2
3,933,650	+		CA265_RS15620	0.78	-0.2
3,933,650	+		CA265_RS15620	0.78	+1.4
3,933,651	-		CA265_RS15620	0.78	-0.5
3,933,743	+		CA265_RS15620	0.82	+1.2
3,933,930	+		CA265_RS15620	0.89	-0.2
3,934,003	+				-0.5
3,934,029	-				+2.4
3,934,049	+				-0.1
3,934,049	+				+1.1
3,934,050	-				-1.7
3,934,050	-				-2.6
3,934,097	+				+0.4
3,934,200	+				-0.2
3,934,202	+				-0.7
3,934,203	-				+0.1
3,934,226	+				-0.2
3,934,229	+				+0.9
3,934,301	+				-1.3
3,934,301	+				+0.4
3,934,301	+				-0.5
3,934,346	+				+0.5
3,934,378	+		CA265_RS15625	0.10	-1.1
3,934,379	-		CA265_RS15625	0.10	-1.0
3,934,426	+		CA265_RS15625	0.14	+0.3
3,934,540	+		CA265_RS15625	0.22	+1.1
3,934,544	+		CA265_RS15625	0.22	-0.5
3,934,578	-		CA265_RS15625	0.24	-1.5
3,934,634	+		CA265_RS15625	0.28	+0.4
3,934,635	-		CA265_RS15625	0.28	-1.0
3,934,829	+		CA265_RS15625	0.42	-1.4
3,934,862	-		CA265_RS15625	0.44	-1.4
3,934,862	-		CA265_RS15625	0.44	-3.2
3,934,862	-		CA265_RS15625	0.44	-0.3
3,934,908	-		CA265_RS15625	0.47	-2.5
3,934,908	-		CA265_RS15625	0.47	-0.7
3,934,919	+		CA265_RS15625	0.48	-0.3
3,934,937	+		CA265_RS15625	0.49	-0.6
3,934,938	-		CA265_RS15625	0.50	-1.2
3,934,977	+		CA265_RS15625	0.52	+0.4
3,934,989	-		CA265_RS15625	0.53	+0.6
3,935,013	+				-0.5
3,935,020	+		CA265_RS15625	0.55	-0.9
3,935,058	+		CA265_RS15625	0.58	+0.1
3,935,059	-		CA265_RS15625	0.58	-0.6
3,935,085	+		CA265_RS15625	0.60	-1.1
3,935,085	+		CA265_RS15625	0.60	-2.2
3,935,103	+		CA265_RS15625	0.61	+0.8
3,935,104	-		CA265_RS15625	0.61	-0.3
3,935,178	+		CA265_RS15625	0.66	+0.6