Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14220

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
3,586,423	+		CA265_RS14215	0.81	+1.8
3,586,458	-		CA265_RS14215	0.82	+0.9
3,586,470	+		CA265_RS14215	0.83	+0.4
3,586,497	+		CA265_RS14215	0.83	-2.1
3,586,499	+		CA265_RS14215	0.83	+0.7
3,586,499	+		CA265_RS14215	0.83	+0.1
3,586,499	+		CA265_RS14215	0.83	-0.4
3,586,520	+		CA265_RS14215	0.84	+1.1
3,586,521	-		CA265_RS14215	0.84	+0.8
3,586,561	-		CA265_RS14215	0.85	+1.1
3,586,564	-		CA265_RS14215	0.85	+0.8
3,586,574	+		CA265_RS14215	0.85	-1.2
3,586,575	-		CA265_RS14215	0.85	-0.2
3,586,575	-		CA265_RS14215	0.85	-0.3
3,586,676	-		CA265_RS14215	0.88	-0.6
3,586,717	+		CA265_RS14215	0.89	-1.2
3,586,717	+		CA265_RS14215	0.89	-0.2
3,586,717	+		CA265_RS14215	0.89	+0.1
3,586,720	-		CA265_RS14215	0.89	-0.8
3,586,720	-		CA265_RS14215	0.89	-0.3
3,586,842	+				+0.6
3,586,876	-				-0.9
3,586,963	+				+0.9
3,586,997	+				+3.7
3,587,066	+				+0.9
3,587,067	-				-0.4
3,587,081	-				-0.1
3,587,188	-				-0.2
3,587,188	-				-1.4
3,587,238	+				-0.5
3,587,276	+				+1.7
3,587,277	-				+0.7
3,587,293	+				+0.4
3,587,294	-				-0.1
3,587,297	+				+0.0
3,587,328	-				+0.8
3,587,395	-				-0.5
3,587,420	+				-1.9
3,587,450	-				-0.8
3,587,455	+				+0.0
3,587,487	+				+0.0
3,587,513	-				-0.3
3,587,592	+		CA265_RS14220	0.12	+0.5
3,587,679	+		CA265_RS14220	0.17	+1.7
3,587,721	+		CA265_RS14220	0.20	+1.8
3,587,725	+		CA265_RS14220	0.20	-0.6
3,587,799	+		CA265_RS14220	0.24	-1.8
3,587,799	+		CA265_RS14220	0.24	-0.8
3,587,799	+		CA265_RS14220	0.24	-0.2
3,587,800	-		CA265_RS14220	0.24	+1.5
3,587,803	+		CA265_RS14220	0.25	-0.5
3,587,803	+		CA265_RS14220	0.25	-0.1
3,587,806	+		CA265_RS14220	0.25	+0.5
3,587,860	+		CA265_RS14220	0.28	+0.3
3,587,863	-		CA265_RS14220	0.28	-1.4
3,587,894	+		CA265_RS14220	0.30	+1.2
3,587,894	+		CA265_RS14220	0.30	-2.4
3,587,895	-		CA265_RS14220	0.30	+0.8
3,587,896	+		CA265_RS14220	0.30	+0.4
3,587,909	-		CA265_RS14220	0.31	+0.5
3,587,955	+		CA265_RS14220	0.34	+0.0
3,587,959	-		CA265_RS14220	0.34	-0.2
3,588,036	+		CA265_RS14220	0.38	+1.2
3,588,086	+		CA265_RS14220	0.41	-0.4
3,588,228	-		CA265_RS14220	0.50	-1.9
3,588,229	+		CA265_RS14220	0.50	+0.5
3,588,230	-		CA265_RS14220	0.50	-0.4
3,588,230	-		CA265_RS14220	0.50	+1.5
3,588,241	+		CA265_RS14220	0.50	-0.1
3,588,245	+		CA265_RS14220	0.51	-1.9
3,588,258	+		CA265_RS14220	0.51	-2.9
3,588,274	+		CA265_RS14220	0.52	-2.4
3,588,275	-		CA265_RS14220	0.52	+0.0
3,588,295	+		CA265_RS14220	0.54	-0.6
3,588,295	+		CA265_RS14220	0.54	-1.3
3,588,296	-		CA265_RS14220	0.54	-1.8
3,588,296	-		CA265_RS14220	0.54	+0.2
3,588,298	+		CA265_RS14220	0.54	-1.0
3,588,298	+		CA265_RS14220	0.54	-1.5
3,588,299	-		CA265_RS14220	0.54	+0.5
3,588,326	+		CA265_RS14220	0.55	-0.0
3,588,327	-		CA265_RS14220	0.56	-0.1
3,588,361	+		CA265_RS14220	0.58	-1.2
3,588,362	-		CA265_RS14220	0.58	-0.4
3,588,386	+		CA265_RS14220	0.59	-1.8
3,588,386	+		CA265_RS14220	0.59	+1.0
3,588,386	+		CA265_RS14220	0.59	-1.8
3,588,388	+		CA265_RS14220	0.59	-2.4
3,588,461	+		CA265_RS14220	0.63	+0.1
3,588,461	+		CA265_RS14220	0.63	-2.8
3,588,484	+		CA265_RS14220	0.65	+0.8
3,588,530	-		CA265_RS14220	0.67	+0.4
3,588,530	-		CA265_RS14220	0.67	+0.6
3,588,560	+		CA265_RS14220	0.69	+0.2
3,588,561	-		CA265_RS14220	0.69	+0.9
3,588,561	-		CA265_RS14220	0.69	-0.7
3,588,573	+		CA265_RS14220	0.70	-1.0
3,588,631	-		CA265_RS14220	0.73	+0.0
3,588,773	+		CA265_RS14220	0.82	-0.6
3,588,774	-		CA265_RS14220	0.82	+0.4
3,588,777	+		CA265_RS14220	0.82	-0.9
3,588,788	+		CA265_RS14220	0.83	-0.2
3,588,789	-		CA265_RS14220	0.83	+0.4
3,588,791	-		CA265_RS14220	0.83	-1.4
3,588,864	-		CA265_RS14220	0.87	+0.1
3,588,951	-				-1.0
3,588,951	-				-0.5
3,589,072	-				-0.5
3,589,115	+				+0.1
3,589,115	+				-1.0
3,589,116	-				+0.7
3,589,140	+				-1.0
3,589,141	-				+0.8
3,589,185	-				+1.0
3,589,191	+		CA265_RS14225	0.10	-0.2
3,589,191	+		CA265_RS14225	0.10	+0.2
3,589,192	-		CA265_RS14225	0.10	-3.3
3,589,202	-		CA265_RS14225	0.11	+0.3
3,589,239	+		CA265_RS14225	0.15	-2.6
3,589,362	+		CA265_RS14225	0.25	-2.2
3,589,362	+		CA265_RS14225	0.25	+0.3
3,589,363	-		CA265_RS14225	0.25	-0.9
3,589,370	-		CA265_RS14225	0.26	+0.5
3,589,420	+		CA265_RS14225	0.30	-0.2
3,589,428	+		CA265_RS14225	0.31	+0.9
3,589,474	-		CA265_RS14225	0.35	-0.3
3,589,560	+		CA265_RS14225	0.43	+1.0
3,589,561	-		CA265_RS14225	0.43	+0.3
3,589,561	-		CA265_RS14225	0.43	-3.1
3,589,566	-		CA265_RS14225	0.43	-1.3
3,589,585	+		CA265_RS14225	0.45	-0.3
3,589,615	+		CA265_RS14225	0.48	+0.1
3,589,656	-		CA265_RS14225	0.51	-0.1
3,589,665	-		CA265_RS14225	0.52	-2.6
3,589,711	+		CA265_RS14225	0.56	-1.9
3,589,839	-		CA265_RS14225	0.67	-0.5
3,589,861	-		CA265_RS14225	0.69	+0.3
3,589,862	+		CA265_RS14225	0.69	-0.3
3,590,001	+		CA265_RS14225	0.82	-0.3
3,590,002	-		CA265_RS14225	0.82	+0.0