Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11420

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
2,835,018	+				-2.0
2,835,018	+				+1.6
2,835,224	+		CA265_RS11410	0.45	+0.1
2,835,278	+		CA265_RS11410	0.55	+0.2
2,835,278	+		CA265_RS11410	0.55	-2.2
2,835,279	-		CA265_RS11410	0.55	-1.6
2,835,296	-		CA265_RS11410	0.58	+1.4
2,835,387	+		CA265_RS11410	0.75	-2.4
2,835,470	-		CA265_RS11410	0.90	-1.8
2,835,470	-		CA265_RS11410	0.90	+0.0
2,835,503	-				+0.6
2,835,514	-				+1.5
2,835,538	-				+1.3
2,835,551	+				-0.6
2,835,552	-				-1.9
2,835,555	+				-0.4
2,835,555	+				+0.5
2,835,665	+		CA265_RS11415	0.28	-1.5
2,835,721	-		CA265_RS11415	0.42	-1.2
2,835,783	+		CA265_RS11415	0.58	-1.2
2,835,813	-		CA265_RS11415	0.66	-3.1
2,835,854	+		CA265_RS11415	0.76	-2.2
2,835,886	+		CA265_RS11415	0.85	-3.8
2,835,887	-		CA265_RS11415	0.85	+0.1
2,835,887	-		CA265_RS11415	0.85	-2.5
2,835,925	-				-0.8
2,835,927	+				+0.6
2,835,932	+				-1.9
2,835,943	+				-2.3
2,835,948	-				+0.9
2,835,951	+				-0.3
2,835,951	+				-0.6
2,836,001	+				-0.1
2,836,014	-				-0.8
2,836,014	-				-2.0
2,836,077	+		CA265_RS11420	0.15	-2.1
2,836,077	+		CA265_RS11420	0.15	-0.1
2,836,101	+		CA265_RS11420	0.19	-0.2
2,836,129	-		CA265_RS11420	0.24	+0.7
2,836,343	-		CA265_RS11420	0.60	+0.4
2,836,346	+		CA265_RS11420	0.60	-2.0
2,836,347	-		CA265_RS11420	0.60	-1.5
2,836,347	-		CA265_RS11420	0.60	-0.4
2,836,390	-		CA265_RS11420	0.68	-0.9
2,836,422	-		CA265_RS11420	0.73	-0.5
2,836,436	+		CA265_RS11420	0.75	+0.6
2,836,436	+		CA265_RS11420	0.75	-1.0
2,836,458	-		CA265_RS11420	0.79	-1.0
2,836,458	-		CA265_RS11420	0.79	-0.5
2,836,471	-				-1.0
2,836,471	-		CA265_RS11420	0.81	-4.1
2,836,574	+				+0.2
2,836,575	-				-2.3
2,836,575	-				-0.2
2,836,626	+				+0.6
2,836,638	+				+0.1
2,836,769	+				-0.0
2,836,769	+				-1.2
2,836,770	-				-1.2
2,836,775	-				+0.3
2,836,775	-				+1.0
2,836,862	+		CA265_RS11425	0.10	+0.0
2,836,899	-		CA265_RS11425	0.12	+1.6
2,836,941	-		CA265_RS11425	0.13	-0.9
2,836,990	-		CA265_RS11425	0.15	-1.0
2,837,081	+		CA265_RS11425	0.18	-1.0
2,837,252	+		CA265_RS11425	0.25	+0.2
2,837,253	-		CA265_RS11425	0.25	-1.9
2,837,254	+		CA265_RS11425	0.25	-1.9
2,837,255	-		CA265_RS11425	0.25	+0.3
2,837,274	-		CA265_RS11425	0.25	-1.3
2,837,395	+		CA265_RS11425	0.30	+1.2
2,837,442	-		CA265_RS11425	0.32	+0.5
2,837,526	-		CA265_RS11425	0.35	-2.5
2,837,532	+		CA265_RS11425	0.35	-0.7