Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10335

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
2,555,465	-		CA265_RS10330	0.73	-0.3
2,555,477	+		CA265_RS10330	0.74	-0.4
2,555,512	-		CA265_RS10330	0.76	+1.6
2,555,594	+		CA265_RS10330	0.83	-0.2
2,555,595	-		CA265_RS10330	0.83	+0.5
2,555,634	+		CA265_RS10330	0.86	-0.6
2,555,686	-				+1.3
2,555,696	-				-0.2
2,555,710	-				+0.1
2,555,849	-				-0.6
2,555,896	+				+0.7
2,555,897	-				+0.2
2,555,897	-				-2.6
2,555,897	-				+0.2
2,555,923	-				-0.2
2,555,928	+				+0.8
2,555,929	-				-2.1
2,556,000	+				-2.1
2,556,101	+				-0.8
2,556,102	-				-2.9
2,556,153	+				-0.3
2,556,166	-				-2.0
2,556,252	+				-3.0
2,556,264	+				-0.3
2,556,505	-				-0.6
2,556,534	+		CA265_RS10335	0.10	+0.7
2,556,534	+				+0.7
2,556,558	+		CA265_RS10335	0.12	-0.6
2,556,558	+		CA265_RS10335	0.12	-0.3
2,556,559	-		CA265_RS10335	0.12	-0.3
2,556,689	-		CA265_RS10335	0.19	-1.4
2,556,795	+		CA265_RS10335	0.26	-0.3
2,556,828	-		CA265_RS10335	0.28	+0.6
2,556,849	-		CA265_RS10335	0.29	-1.1
2,556,876	+		CA265_RS10335	0.31	+1.2
2,556,931	-		CA265_RS10335	0.34	-1.5
2,556,933	-		CA265_RS10335	0.34	-0.2
2,556,933	-		CA265_RS10335	0.34	-1.3
2,557,119	+		CA265_RS10335	0.45	-1.0
2,557,120	-		CA265_RS10335	0.45	-3.7
2,557,120	-		CA265_RS10335	0.45	-0.0
2,557,120	-		CA265_RS10335	0.45	-0.5
2,557,180	+		CA265_RS10335	0.49	-2.1
2,557,180	+		CA265_RS10335	0.49	-1.5
2,557,213	-		CA265_RS10335	0.51	+0.8
2,557,243	+		CA265_RS10335	0.52	-0.0
2,557,463	+		CA265_RS10335	0.66	+1.1
2,557,527	-		CA265_RS10335	0.69	+0.4
2,557,609	-		CA265_RS10335	0.74	-2.0
2,557,609	-		CA265_RS10335	0.74	-1.2
2,557,609	-		CA265_RS10335	0.74	-3.1
2,557,609	-		CA265_RS10335	0.74	-0.4
2,557,609	-		CA265_RS10335	0.74	-3.4
2,557,796	-		CA265_RS10335	0.85	-0.5
2,557,824	-		CA265_RS10335	0.87	-1.8
2,557,824	-		CA265_RS10335	0.87	+0.4
2,558,029	-				+0.7
2,558,031	-				+1.2
2,558,034	+				+1.0
2,558,034	+				-3.6
2,558,035	-				+1.6
2,558,035	-				+0.2
2,558,035	-				+0.3
2,558,035	-				+0.5
2,558,136	-		CA265_RS10340	0.17	-1.8
2,558,136	-		CA265_RS10340	0.17	-0.2
2,558,266	+		CA265_RS10340	0.39	+0.3
2,558,275	-		CA265_RS10340	0.40	-2.0
2,558,347	+		CA265_RS10340	0.52	+0.3
2,558,351	+		CA265_RS10340	0.53	+0.6
2,558,528	+		CA265_RS10340	0.83	-1.6
2,558,549	+		CA265_RS10340	0.87	-1.1
2,558,577	-				+0.3
2,558,638	-				+1.7
2,558,687	+				-2.2
2,558,691	+				-0.2
2,558,691	+				+0.0
2,558,692	-				+0.5
2,558,692	-				+1.3
2,558,704	+				-0.2
2,558,704	+				+0.3
2,558,705	-				+1.1
2,558,801	-				+0.2
2,558,803	-				-1.0
2,558,805	-				-0.9
2,558,844	+				+0.1
2,558,956	-		CA265_RS10345	0.14	+0.3
2,558,969	+		CA265_RS10345	0.15	+0.3
2,558,979	+		CA265_RS10345	0.15	+0.5
2,558,980	-		CA265_RS10345	0.15	+0.5