Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07250

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,815,739	+		CA265_RS07240	0.82	+0.3
1,815,775	+		CA265_RS07240	0.87	-0.8
1,815,776	-		CA265_RS07240	0.87	-1.1
1,815,807	-				-0.2
1,815,848	+				+0.0
1,815,876	-				-2.6
1,816,008	-				-0.0
1,816,008	-				+0.8
1,816,073	-		CA265_RS07245	0.16	+0.1
1,816,099	-		CA265_RS07245	0.19	+1.1
1,816,209	+		CA265_RS07245	0.35	-1.4
1,816,268	+		CA265_RS07245	0.43	-0.4
1,816,269	-		CA265_RS07245	0.44	+0.6
1,816,274	-		CA265_RS07245	0.44	+0.3
1,816,292	+		CA265_RS07245	0.47	+1.3
1,816,293	-		CA265_RS07245	0.47	-0.2
1,816,486	+		CA265_RS07245	0.74	+1.9
1,816,540	-		CA265_RS07245	0.82	-1.6
1,816,605	+				+0.3
1,816,605	+				+0.3
1,816,626	+				-0.7
1,816,661	+				-0.6
1,816,661	+				+0.5
1,816,661	+				+0.1
1,816,707	-				-1.2
1,816,718	-				-0.3
1,816,718	-				+0.6
1,816,788	+		CA265_RS07250	0.10	-0.6
1,816,821	+		CA265_RS07250	0.13	-3.7
1,816,916	+		CA265_RS07250	0.23	-3.1
1,816,956	+		CA265_RS07250	0.28	-0.8
1,816,972	+		CA265_RS07250	0.29	-0.3
1,816,972	+		CA265_RS07250	0.29	+1.5
1,817,085	-		CA265_RS07250	0.41	-0.2
1,817,118	-				+1.7
1,817,118	-		CA265_RS07250	0.44	-0.1
1,817,188	-		CA265_RS07250	0.52	+0.4
1,817,344	-		CA265_RS07250	0.68	-0.3
1,817,378	+		CA265_RS07250	0.71	-1.0
1,817,472	-		CA265_RS07250	0.81	-0.9
1,817,486	+		CA265_RS07250	0.83	-0.5
1,817,529	-		CA265_RS07250	0.87	+0.9
1,817,680	-				+0.6
1,817,686	+				-2.0
1,817,687	-				+1.2
1,817,795	-				+0.3
1,817,832	+				-1.0
1,817,833	-				-1.1
1,817,854	-				+0.3
1,817,893	+		CA265_RS07255	0.10	-0.1
1,817,987	+		CA265_RS07255	0.24	+1.8
1,817,988	-		CA265_RS07255	0.24	-1.7
1,818,001	-		CA265_RS07255	0.26	+1.0
1,818,008	-		CA265_RS07255	0.27	-2.2
1,818,053	+		CA265_RS07255	0.33	-0.4
1,818,054	-		CA265_RS07255	0.33	-1.8
1,818,057	+		CA265_RS07255	0.34	-1.1
1,818,179	-		CA265_RS07255	0.52	+0.9
1,818,179	-		CA265_RS07255	0.52	+0.9
1,818,182	+		CA265_RS07255	0.52	-1.4
1,818,182	+		CA265_RS07255	0.52	-0.1
1,818,183	-		CA265_RS07255	0.52	-0.6
1,818,183	-		CA265_RS07255	0.52	-0.3
1,818,262	-		CA265_RS07255	0.64	-1.0
1,818,288	-		CA265_RS07255	0.67	+0.3
1,818,328	+		CA265_RS07255	0.73	+1.4
1,818,328	+		CA265_RS07255	0.73	+0.2
1,818,337	+		CA265_RS07255	0.74	+1.6
1,818,379	-		CA265_RS07255	0.81	+0.0
1,818,381	-		CA265_RS07255	0.81	+0.2
1,818,381	-		CA265_RS07255	0.81	-0.3
1,818,430	+		CA265_RS07255	0.88	-0.3