Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06800

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,684,355	+		CA265_RS06795	0.70	-0.0
1,684,356	-		CA265_RS06795	0.70	-0.4
1,684,420	+		CA265_RS06795	0.72	+0.5
1,684,421	-		CA265_RS06795	0.72	+0.1
1,684,421	-		CA265_RS06795	0.72	+1.1
1,684,475	+		CA265_RS06795	0.74	-1.8
1,684,481	+		CA265_RS06795	0.74	+0.6
1,684,546	-		CA265_RS06795	0.76	+0.8
1,684,548	-		CA265_RS06795	0.76	-1.1
1,684,607	+		CA265_RS06795	0.78	+1.5
1,684,609	+		CA265_RS06795	0.78	+0.0
1,684,662	+		CA265_RS06795	0.80	+0.3
1,684,724	+		CA265_RS06795	0.82	-0.7
1,684,760	-		CA265_RS06795	0.83	+0.5
1,684,760	-		CA265_RS06795	0.83	+0.4
1,684,773	+		CA265_RS06795	0.83	-2.4
1,684,834	-		CA265_RS06795	0.85	+0.1
1,684,836	-		CA265_RS06795	0.85	+1.3
1,684,873	-		CA265_RS06795	0.87	-0.5
1,684,892	+		CA265_RS06795	0.87	-1.7
1,684,925	-		CA265_RS06795	0.88	-2.6
1,684,994	+				-2.3
1,685,029	-				-0.8
1,685,068	+				-3.4
1,685,090	+				+0.2
1,685,090	+				-0.9
1,685,091	-				+1.0
1,685,114	+				-0.4
1,685,115	-				+0.1
1,685,174	+				-0.6
1,685,178	+				+1.0
1,685,178	+				+1.5
1,685,189	-				+0.5
1,685,208	+				+0.1
1,685,208	+				-2.7
1,685,209	-				+1.8
1,685,238	+				-2.2
1,685,286	-				+1.2
1,685,314	-				+0.6
1,685,357	-				-0.4
1,685,358	+				+0.1
1,685,456	-				-0.5
1,685,475	-				-0.7
1,685,475	-				-0.2
1,685,528	-		CA265_RS06800	0.10	-0.0
1,685,549	+		CA265_RS06800	0.11	-3.0
1,685,578	-		CA265_RS06800	0.13	-3.1
1,685,578	-		CA265_RS06800	0.13	+0.7
1,685,637	-		CA265_RS06800	0.15	-0.8
1,685,637	-		CA265_RS06800	0.15	+0.4
1,685,637	-		CA265_RS06800	0.15	+1.1
1,685,637	-		CA265_RS06800	0.15	+1.0
1,685,644	+		CA265_RS06800	0.16	+0.3
1,685,737	-		CA265_RS06800	0.20	+0.4
1,685,750	+		CA265_RS06800	0.21	+2.2
1,685,772	-		CA265_RS06800	0.22	+1.0
1,685,772	-		CA265_RS06800	0.22	-1.4
1,685,800	+		CA265_RS06800	0.24	-0.1
1,685,857	-		CA265_RS06800	0.26	-0.7
1,685,858	+		CA265_RS06800	0.27	-0.9
1,685,858	+		CA265_RS06800	0.27	-0.6
1,685,869	-		CA265_RS06800	0.27	-0.0
1,685,878	+				+0.1
1,685,959	+		CA265_RS06800	0.32	-2.9
1,685,983	+		CA265_RS06800	0.33	-2.7
1,686,017	+		CA265_RS06800	0.34	+1.1
1,686,042	+		CA265_RS06800	0.36	-0.4
1,686,085	+		CA265_RS06800	0.38	+0.3
1,686,236	-		CA265_RS06800	0.45	+0.5
1,686,238	-		CA265_RS06800	0.46	+1.2
1,686,374	+		CA265_RS06800	0.52	-0.2
1,686,377	+		CA265_RS06800	0.52	+0.7
1,686,378	-		CA265_RS06800	0.53	-2.3
1,686,380	-		CA265_RS06800	0.53	-0.4
1,686,380	-		CA265_RS06800	0.53	+1.5
1,686,384	-		CA265_RS06800	0.53	-3.0
1,686,388	+		CA265_RS06800	0.53	+1.5
1,686,403	-		CA265_RS06800	0.54	-1.2
1,686,404	+		CA265_RS06800	0.54	+0.3
1,686,405	-		CA265_RS06800	0.54	+0.4
1,686,440	+		CA265_RS06800	0.56	-0.3
1,686,440	+		CA265_RS06800	0.56	-0.2
1,686,441	-		CA265_RS06800	0.56	+0.6
1,686,508	-		CA265_RS06800	0.59	+1.1
1,686,508	-		CA265_RS06800	0.59	-2.2
1,686,564	-		CA265_RS06800	0.62	-1.0
1,686,603	+		CA265_RS06800	0.64	-0.4
1,686,604	-		CA265_RS06800	0.64	-0.1
1,686,655	-		CA265_RS06800	0.66	-0.2
1,686,659	-		CA265_RS06800	0.67	-0.7
1,686,694	+		CA265_RS06800	0.68	+0.1
1,686,694	+		CA265_RS06800	0.68	+0.6
1,686,728	-		CA265_RS06800	0.70	+0.4
1,686,764	-		CA265_RS06800	0.72	-1.1
1,686,790	-		CA265_RS06800	0.73	-3.3
1,686,794	-		CA265_RS06800	0.73	+1.2
1,686,811	+		CA265_RS06800	0.74	+1.4
1,686,849	+		CA265_RS06800	0.76	-0.1
1,686,857	-		CA265_RS06800	0.76	-0.9
1,686,857	-		CA265_RS06800	0.76	-1.9
1,686,864	-		CA265_RS06800	0.77	+0.2
1,686,911	-		CA265_RS06800	0.79	+1.9
1,687,024	+		CA265_RS06800	0.85	-0.3
1,687,144	+				+0.9
1,687,174	+				-0.9
1,687,220	+				+0.2
1,687,245	+				-1.4
1,687,245	+				+1.1
1,687,246	-				+1.1
1,687,298	-				+0.2
1,687,333	-				-0.2
1,687,361	+				+0.0
1,687,361	+				-0.2
1,687,381	+				-0.9
1,687,384	+				+0.4
1,687,384	+				+0.5
1,687,446	-				+0.3
1,687,473	-		CA265_RS06805	0.12	+0.2
1,687,593	-		CA265_RS06805	0.24	+0.3
1,687,626	-		CA265_RS06805	0.27	-1.1
1,687,631	+		CA265_RS06805	0.27	-0.7
1,687,632	-		CA265_RS06805	0.28	-1.7
1,687,649	-		CA265_RS06805	0.29	+0.4
1,687,704	-		CA265_RS06805	0.34	+1.5
1,687,724	+		CA265_RS06805	0.36	-0.2
1,687,736	+		CA265_RS06805	0.38	-1.1
1,687,737	-		CA265_RS06805	0.38	-3.5
1,687,746	-		CA265_RS06805	0.39	-0.6
1,687,769	+		CA265_RS06805	0.41	-1.2
1,687,868	+		CA265_RS06805	0.50	-1.4
1,687,878	-		CA265_RS06805	0.51	-0.2
1,687,898	+		CA265_RS06805	0.53	+0.1
1,687,899	-		CA265_RS06805	0.53	+0.5
1,687,936	+		CA265_RS06805	0.57	+0.6
1,687,965	+		CA265_RS06805	0.60	+0.5
1,687,967	+		CA265_RS06805	0.60	+1.0
1,687,968	-		CA265_RS06805	0.60	-2.2
1,688,010	+		CA265_RS06805	0.64	-1.0
1,688,021	+		CA265_RS06805	0.65	+0.9
1,688,043	-		CA265_RS06805	0.67	-1.0
1,688,088	+		CA265_RS06805	0.72	-1.4
1,688,089	-		CA265_RS06805	0.72	-2.3
1,688,090	+		CA265_RS06805	0.72	-0.8
1,688,090	+		CA265_RS06805	0.72	+0.8
1,688,090	+		CA265_RS06805	0.72	-1.0
1,688,090	+		CA265_RS06805	0.72	+1.2
1,688,262	-		CA265_RS06805	0.88	-0.1
1,688,284	+				+0.1