Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06250

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,536,858	-				-1.8
1,536,882	+				-0.5
1,536,959	-				-1.5
1,536,964	+				-3.0
1,536,970	-				+1.2
1,536,974	+				-1.0
1,536,975	-				+1.7
1,536,982	-				-1.6
1,537,010	-		CA265_RS06240	0.17	-0.2
1,537,015	-		CA265_RS06240	0.19	+0.0
1,537,015	-		CA265_RS06240	0.19	-1.2
1,537,044	+		CA265_RS06240	0.32	-0.9
1,537,062	+		CA265_RS06240	0.41	+1.5
1,537,099	-		CA265_RS06240	0.58	+1.4
1,537,129	-		CA265_RS06240	0.71	-0.0
1,537,129	-		CA265_RS06240	0.71	+0.5
1,537,318	+				-0.3
1,537,318	+				-0.4
1,537,725	+				-0.8
1,537,741	+				-2.0
1,537,808	+		CA265_RS06250	0.10	+2.3
1,537,849	+		CA265_RS06250	0.17	+2.2
1,538,058	+		CA265_RS06250	0.54	-2.6
1,538,241	+		CA265_RS06250	0.87	+0.3
1,538,342	+				+1.8
1,538,412	-				+0.2
1,538,454	+		CA265_RS06255	0.12	-0.8
1,538,455	-		CA265_RS06255	0.12	-0.4
1,538,520	+		CA265_RS06255	0.18	-0.8
1,538,521	-		CA265_RS06255	0.18	+1.3
1,538,605	-		CA265_RS06255	0.26	-1.2
1,538,664	+		CA265_RS06255	0.31	-0.8
1,538,994	-		CA265_RS06255	0.61	-1.0
1,539,008	-		CA265_RS06255	0.63	-2.8
1,539,036	-		CA265_RS06255	0.65	-0.8