Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06045

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,481,650	-		CA265_RS06035	0.79	-0.0
1,481,781	+		CA265_RS06035	0.86	+0.2
1,481,815	+		CA265_RS06035	0.88	+1.7
1,481,820	-		CA265_RS06035	0.88	+0.2
1,481,889	+				-0.9
1,482,084	+				+0.3
1,482,180	+				+0.8
1,482,181	-				+1.0
1,482,188	+				-1.9
1,482,197	+				+0.8
1,482,198	-				-0.5
1,482,199	+				+0.5
1,482,229	-		CA265_RS06040	0.26	-1.2
1,482,288	-		CA265_RS06040	0.58	+0.1
1,482,302	-		CA265_RS06040	0.66	-1.6
1,482,355	+				-1.4
1,482,355	+				+0.5
1,482,355	+				+0.4
1,482,383	+				+0.5
1,482,383	+				-0.1
1,482,384	-				-0.3
1,482,432	+				-1.4
1,482,542	-				-0.9
1,482,604	-				+0.2
1,482,620	+				-0.7
1,482,675	+				+0.3
1,482,676	-				+0.7
1,482,687	-				-2.1
1,482,716	+				-1.7
1,482,716	+				-3.0
1,482,842	+		CA265_RS06045	0.16	+1.2
1,482,894	+		CA265_RS06045	0.19	-2.1
1,482,942	+		CA265_RS06045	0.22	-1.7
1,482,942	+		CA265_RS06045	0.22	+0.4
1,482,943	-		CA265_RS06045	0.22	-2.6
1,483,003	-		CA265_RS06045	0.26	+1.2
1,483,013	+		CA265_RS06045	0.26	+0.1
1,483,014	-		CA265_RS06045	0.26	+0.2
1,483,014	-		CA265_RS06045	0.26	-1.7
1,483,064	-		CA265_RS06045	0.29	+0.9
1,483,094	-		CA265_RS06045	0.31	+1.1
1,483,143	-		CA265_RS06045	0.34	-0.8
1,483,182	+		CA265_RS06045	0.36	+0.2
1,483,257	+		CA265_RS06045	0.41	+0.3
1,483,287	-		CA265_RS06045	0.43	-4.2
1,483,314	+		CA265_RS06045	0.44	-0.8
1,483,315	-		CA265_RS06045	0.44	+0.8
1,483,321	-		CA265_RS06045	0.45	-0.5
1,483,379	+		CA265_RS06045	0.48	+0.0
1,483,390	-		CA265_RS06045	0.49	+0.7
1,483,390	-		CA265_RS06045	0.49	+1.4
1,483,477	+		CA265_RS06045	0.54	-2.6
1,483,478	-		CA265_RS06045	0.54	+0.3
1,483,498	-		CA265_RS06045	0.55	-1.8
1,483,551	-		CA265_RS06045	0.59	-1.3
1,483,555	-		CA265_RS06045	0.59	-1.0
1,483,557	+		CA265_RS06045	0.59	+0.1
1,483,641	+		CA265_RS06045	0.64	+0.1
1,483,641	+		CA265_RS06045	0.64	-0.8
1,483,654	-		CA265_RS06045	0.65	+0.4
1,483,663	+		CA265_RS06045	0.65	-1.2
1,483,664	-		CA265_RS06045	0.65	-2.3
1,483,738	-		CA265_RS06045	0.70	+0.3
1,483,740	+		CA265_RS06045	0.70	+1.0
1,483,874	-		CA265_RS06045	0.78	-0.3
1,483,925	+		CA265_RS06045	0.81	+0.8
1,483,926	-		CA265_RS06045	0.81	-3.0
1,483,992	+		CA265_RS06045	0.85	-3.2
1,484,023	+		CA265_RS06045	0.87	-0.7
1,484,023	+		CA265_RS06045	0.87	-0.7
1,484,024	-		CA265_RS06045	0.87	-0.3
1,484,024	-		CA265_RS06045	0.87	-0.6
1,484,137	+				-0.2
1,484,137	+				+0.1
1,484,188	-				-0.1
1,484,192	+				-2.5
1,484,233	+				+1.2
1,484,264	+				+1.0
1,484,308	-				-0.4
1,484,308	-				-0.1
1,484,431	+				+0.9
1,484,437	+				+0.2
1,484,451	-				-2.5
1,484,451	-				-0.4
1,484,480	-				+0.3
1,484,488	-				-2.3
1,484,498	+				-0.4
1,484,498	+				-1.4
1,484,499	-				+1.0
1,484,499	-				+0.6
1,484,561	+				+0.8
1,484,570	-				+1.5
1,484,661	+				-0.3
1,484,666	-				-0.1
1,484,687	+				+1.6
1,484,687	+				+1.9
1,484,688	-				-0.1
1,484,724	-				-0.1
1,484,752	-				+0.7
1,484,778	+		CA265_RS06050	0.10	+0.7
1,484,778	+		CA265_RS06050	0.10	+0.1
1,484,779	-		CA265_RS06050	0.11	+0.5
1,484,802	+		CA265_RS06050	0.11	-0.4
1,484,803	-		CA265_RS06050	0.11	+0.9
1,484,902	-		CA265_RS06050	0.14	+0.7
1,484,903	+		CA265_RS06050	0.14	+0.3
1,484,956	+		CA265_RS06050	0.15	-0.5
1,484,957	-		CA265_RS06050	0.15	-3.6
1,484,957	-		CA265_RS06050	0.15	-0.0
1,484,978	-		CA265_RS06050	0.15	-0.2
1,485,022	+		CA265_RS06050	0.17	+0.0
1,485,034	+		CA265_RS06050	0.17	-0.9
1,485,035	-		CA265_RS06050	0.17	+0.1
1,485,035	-				-0.2
1,485,134	-		CA265_RS06050	0.19	-1.5
1,485,134	-		CA265_RS06050	0.19	+1.7
1,485,150	+		CA265_RS06050	0.20	-0.7
1,485,203	+		CA265_RS06050	0.21	-0.4
1,485,230	+		CA265_RS06050	0.22	+0.5