Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05285

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,264,014	+				+0.9
1,264,014	+				-0.4
1,264,054	-				-0.2
1,264,079	+				-1.2
1,264,102	-				+0.5
1,264,117	+				-0.7
1,264,169	-				+0.8
1,264,247	-				+0.9
1,264,284	+				+0.4
1,264,297	+				+0.1
1,264,298	-				+1.4
1,264,329	+				+0.6
1,264,330	-				+0.5
1,264,351	+				+0.7
1,264,372	-				-3.3
1,264,374	+				-0.9
1,264,374	+				-2.9
1,264,375	-				-0.7
1,264,382	+				+0.8
1,264,399	+				-1.1
1,264,399	+				+0.8
1,264,402	+				+0.5
1,264,501	+				+0.1
1,264,501	+				-0.1
1,264,502	-				+2.0
1,264,502	-				-1.7
1,264,515	+				+0.9
1,264,516	-				-2.2
1,264,519	+				+0.4
1,264,584	-				-1.4
1,264,584	-				-0.3
1,264,607	+				-0.2
1,264,665	-				-0.5
1,264,710	-				-0.2
1,264,710	-				+1.1
1,264,766	-				-1.8
1,264,776	-				+0.9
1,264,802	-				+1.7
1,264,845	+				-0.9
1,264,855	+				+1.2
1,264,855	+				-0.5
1,264,856	-				+0.7
1,264,856	-				+0.9
1,264,874	-				+1.1
1,264,986	+				+0.7
1,264,987	-				-1.3
1,264,991	-				+1.2
1,265,006	-				+0.6
1,265,062	+				-0.5
1,265,063	-				-0.3
1,265,102	-		CA265_RS05285	0.10	+0.0
1,265,107	-		CA265_RS05285	0.10	+0.1
1,265,131	-		CA265_RS05285	0.11	+0.6
1,265,168	-		CA265_RS05285	0.12	+0.0
1,265,216	-		CA265_RS05285	0.14	-1.3
1,265,236	-		CA265_RS05285	0.14	+0.7
1,265,253	+		CA265_RS05285	0.15	-1.8
1,265,275	-		CA265_RS05285	0.16	-3.2
1,265,280	+		CA265_RS05285	0.16	+0.6
1,265,332	-		CA265_RS05285	0.17	-0.4
1,265,396	-		CA265_RS05285	0.20	-0.4
1,265,538	+		CA265_RS05285	0.24	-3.2
1,265,539	-		CA265_RS05285	0.24	+0.2
1,265,539	-		CA265_RS05285	0.24	-2.0
1,265,545	+		CA265_RS05285	0.24	+1.0
1,265,545	+		CA265_RS05285	0.24	-2.1
1,265,545	+		CA265_RS05285	0.24	+0.1
1,265,546	-		CA265_RS05285	0.24	-3.0
1,265,546	-		CA265_RS05285	0.24	-1.3
1,265,546	-		CA265_RS05285	0.24	+0.4
1,265,687	-		CA265_RS05285	0.29	-0.9
1,265,716	+		CA265_RS05285	0.30	-0.8
1,265,771	-		CA265_RS05285	0.32	-0.9
1,265,794	+				+2.9
1,265,810	-		CA265_RS05285	0.33	-2.3
1,265,861	+		CA265_RS05285	0.34	+1.0
1,265,876	-		CA265_RS05285	0.35	+0.3
1,265,886	-		CA265_RS05285	0.35	-1.0
1,265,985	-		CA265_RS05285	0.38	+0.6
1,266,012	-		CA265_RS05285	0.39	-2.3
1,266,013	+		CA265_RS05285	0.39	-0.5
1,266,051	-		CA265_RS05285	0.40	-0.0
1,266,061	+		CA265_RS05285	0.41	+1.2
1,266,062	-		CA265_RS05285	0.41	+0.6
1,266,189	-		CA265_RS05285	0.45	-0.7
1,266,189	-		CA265_RS05285	0.45	-2.7
1,266,221	-		CA265_RS05285	0.46	-1.4
1,266,295	+		CA265_RS05285	0.48	+0.4
1,266,296	-		CA265_RS05285	0.48	-0.5
1,266,346	-		CA265_RS05285	0.50	+1.1
1,266,391	+		CA265_RS05285	0.51	-0.1
1,266,405	-		CA265_RS05285	0.52	+1.2
1,266,437	-		CA265_RS05285	0.53	+1.3
1,266,476	+		CA265_RS05285	0.54	+0.4
1,266,477	-		CA265_RS05285	0.54	+0.5
1,266,483	-		CA265_RS05285	0.54	+0.9
1,266,700	+		CA265_RS05285	0.61	-0.4
1,266,708	+		CA265_RS05285	0.62	-2.4
1,266,725	+		CA265_RS05285	0.62	+0.1
1,266,752	-		CA265_RS05285	0.63	-0.5
1,266,820	+		CA265_RS05285	0.65	+0.5
1,266,820	+		CA265_RS05285	0.65	+2.6
1,266,886	-		CA265_RS05285	0.67	+0.6
1,266,887	+		CA265_RS05285	0.67	+0.1
1,266,929	-		CA265_RS05285	0.69	+0.4
1,266,946	+		CA265_RS05285	0.69	-1.3
1,266,947	-		CA265_RS05285	0.69	+0.5
1,266,947	-		CA265_RS05285	0.69	+0.4
1,267,017	+		CA265_RS05285	0.71	+0.5
1,267,017	+		CA265_RS05285	0.71	-0.1
1,267,018	-		CA265_RS05285	0.71	+0.2
1,267,018	-		CA265_RS05285	0.71	-1.1
1,267,098	-		CA265_RS05285	0.74	+0.9
1,267,098	-		CA265_RS05285	0.74	-2.3
1,267,131	-		CA265_RS05285	0.75	-0.3
1,267,147	-		CA265_RS05285	0.76	-1.5
1,267,178	+		CA265_RS05285	0.77	+1.2
1,267,210	-		CA265_RS05285	0.78	+0.0
1,267,222	+		CA265_RS05285	0.78	+1.0
1,267,236	-		CA265_RS05285	0.78	-2.7
1,267,278	-		CA265_RS05285	0.80	-0.9
1,267,300	-		CA265_RS05285	0.80	+0.6
1,267,348	+		CA265_RS05285	0.82	-0.0
1,267,439	-		CA265_RS05285	0.85	-0.5
1,267,439	-		CA265_RS05285	0.85	+0.1
1,267,439	-		CA265_RS05285	0.85	-3.9
1,267,464	+		CA265_RS05285	0.86	-0.3
1,267,480	+		CA265_RS05285	0.86	+0.7
1,267,497	-		CA265_RS05285	0.87	+0.4
1,267,511	+		CA265_RS05285	0.87	-2.8
1,267,512	-		CA265_RS05285	0.87	+0.5
1,267,512	-		CA265_RS05285	0.87	+0.2
1,267,562	+		CA265_RS05285	0.89	+2.4
1,267,563	-		CA265_RS05285	0.89	-0.4
1,267,563	-		CA265_RS05285	0.89	-0.1
1,267,604	+				-0.5
1,267,604	+				-2.3
1,267,604	+				+0.1
1,267,607	+				+0.4
1,267,635	+				-0.1
1,267,643	-				-0.0
1,267,643	-				-0.7
1,267,651	+				-2.8
1,267,658	+				+1.7
1,267,763	-				-0.5
1,267,767	-				-0.5
1,267,796	+				+0.2
1,267,796	+				+0.4
1,267,797	-				-0.1
1,267,797	-				-2.0
1,267,820	-				-0.6
1,267,853	-				+0.9
1,267,910	+				-0.3
1,267,911	-				+0.6
1,267,911	-				+1.0
1,267,911	-				-0.3
1,267,934	-				-2.3
1,267,941	+				+0.5
1,267,942	-				+0.9
1,268,068	+				-0.3
1,268,069	-				-2.0
1,268,069	-				-0.9
1,268,089	-		CA265_RS05290	0.11	-1.3
1,268,109	+		CA265_RS05290	0.12	-3.3
1,268,173	-		CA265_RS05290	0.16	+0.5
1,268,183	-		CA265_RS05290	0.17	+0.6
1,268,220	+		CA265_RS05290	0.19	+1.3
1,268,221	-		CA265_RS05290	0.19	+1.1
1,268,248	+		CA265_RS05290	0.21	-2.4
1,268,280	+		CA265_RS05290	0.23	-2.8
1,268,284	+		CA265_RS05290	0.23	+0.1
1,268,285	-		CA265_RS05290	0.24	-1.3
1,268,286	+		CA265_RS05290	0.24	+2.0
1,268,287	-		CA265_RS05290	0.24	-1.1
1,268,288	+		CA265_RS05290	0.24	-0.0
1,268,306	+		CA265_RS05290	0.25	+0.9
1,268,311	-		CA265_RS05290	0.25	-0.7
1,268,311	-		CA265_RS05290	0.25	+1.4
1,268,378	-		CA265_RS05290	0.29	+0.6
1,268,383	+		CA265_RS05290	0.30	-1.5
1,268,421	-		CA265_RS05290	0.32	-0.7
1,268,557	+		CA265_RS05290	0.41	+1.7
1,268,557	+		CA265_RS05290	0.41	+0.3
1,268,559	+		CA265_RS05290	0.41	-2.8
1,268,574	+		CA265_RS05290	0.42	+0.4
1,268,599	+		CA265_RS05290	0.44	-0.3
1,268,599	+		CA265_RS05290	0.44	+1.0
1,268,600	-		CA265_RS05290	0.44	+0.6
1,268,600	-		CA265_RS05290	0.44	+0.3
1,268,680	+		CA265_RS05290	0.49	+2.6
1,268,737	-		CA265_RS05290	0.53	-1.1
1,268,829	+		CA265_RS05290	0.58	+0.3
1,268,863	+		CA265_RS05290	0.61	+0.5