Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05120

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,221,728	+				-3.5
1,221,729	-				-3.1
1,221,729	-				-1.9
1,221,752	-				-0.2
1,221,784	-				-3.9
1,221,861	+				+1.4
1,221,861	+				+1.0
1,221,918	+				-0.9
1,221,942	+		CA265_RS05120	0.12	+0.8
1,221,974	-		CA265_RS05120	0.15	+2.3
1,221,981	-		CA265_RS05120	0.16	-0.5
1,221,987	-		CA265_RS05120	0.17	-1.5
1,222,003	+		CA265_RS05120	0.18	+1.6
1,222,004	-		CA265_RS05120	0.18	+0.7
1,222,004	-		CA265_RS05120	0.18	-0.7
1,222,023	+		CA265_RS05120	0.20	+0.4
1,222,096	+		CA265_RS05120	0.28	-2.1
1,222,096	+		CA265_RS05120	0.28	+0.5
1,222,097	-		CA265_RS05120	0.28	-1.7
1,222,144	-		CA265_RS05120	0.33	-0.9
1,222,215	-		CA265_RS05120	0.40	+0.1
1,222,259	+		CA265_RS05120	0.44	-3.5
1,222,259	+		CA265_RS05120	0.44	+0.3
1,222,259	+		CA265_RS05120	0.44	+0.4
1,222,260	-		CA265_RS05120	0.44	-0.7
1,222,260	-		CA265_RS05120	0.44	-3.5
1,222,292	-		CA265_RS05120	0.47	+1.0
1,222,375	-		CA265_RS05120	0.56	+1.0
1,222,537	+		CA265_RS05120	0.72	-1.4
1,222,538	-		CA265_RS05120	0.72	-0.2
1,222,538	-		CA265_RS05120	0.72	-2.3
1,222,604	-		CA265_RS05120	0.79	-2.1
1,222,604	-		CA265_RS05120	0.79	-2.2
1,222,604	-		CA265_RS05120	0.79	+0.0
1,222,644	+		CA265_RS05120	0.83	-0.6
1,222,684	+		CA265_RS05120	0.87	-0.2
1,222,733	+				+0.2
1,222,770	+				+0.5
1,222,780	-				+1.0
1,222,789	+				+0.2
1,222,790	-				+0.1
1,222,790	-				-0.1
1,222,813	+				-0.4
1,222,825	+				+0.1
1,222,912	+				+0.5
1,222,965	-				+0.1
1,222,969	+				-1.3
1,222,969	+				-0.4
1,222,977	+				+1.0
1,223,009	+		CA265_RS05125	0.12	-2.5
1,223,122	+		CA265_RS05125	0.24	+2.0
1,223,197	+		CA265_RS05125	0.32	+1.9
1,223,205	+		CA265_RS05125	0.33	+0.7
1,223,206	-		CA265_RS05125	0.33	-2.5
1,223,209	+		CA265_RS05125	0.33	+2.1
1,223,239	-		CA265_RS05125	0.37	+0.2
1,223,257	-		CA265_RS05125	0.39	+1.6
1,223,258	+		CA265_RS05125	0.39	-2.6
1,223,326	-		CA265_RS05125	0.46	-2.1
1,223,327	+		CA265_RS05125	0.46	-0.5
1,223,328	-		CA265_RS05125	0.46	-0.2
1,223,405	+		CA265_RS05125	0.54	+0.2
1,223,409	+		CA265_RS05125	0.55	-1.5
1,223,410	-		CA265_RS05125	0.55	+0.5
1,223,467	+		CA265_RS05125	0.61	+0.4
1,223,468	-		CA265_RS05125	0.61	+0.4
1,223,500	+		CA265_RS05125	0.65	-0.8
1,223,500	+		CA265_RS05125	0.65	+0.3
1,223,501	-		CA265_RS05125	0.65	+0.9
1,223,503	+		CA265_RS05125	0.65	-0.8
1,223,504	-		CA265_RS05125	0.65	+0.2
1,223,512	-		CA265_RS05125	0.66	-0.1
1,223,524	-		CA265_RS05125	0.67	+1.2
1,223,624	-		CA265_RS05125	0.78	+2.4
1,223,727	-		CA265_RS05125	0.89	-0.1
1,223,749	-				+1.6