Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04330

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,042,796	+		CA265_RS04320	0.60	-1.4
1,042,797	-		CA265_RS04320	0.60	-0.0
1,042,920	+		CA265_RS04320	0.68	+1.3
1,042,921	-		CA265_RS04320	0.68	+0.4
1,042,999	+		CA265_RS04320	0.73	+1.0
1,042,999	+		CA265_RS04320	0.73	+0.9
1,043,000	-		CA265_RS04320	0.73	-2.0
1,043,000	-		CA265_RS04320	0.73	+0.4
1,043,051	+		CA265_RS04320	0.77	+2.1
1,043,157	-		CA265_RS04320	0.83	+0.2
1,043,157	-		CA265_RS04320	0.83	+0.5
1,043,175	+		CA265_RS04320	0.85	-1.1
1,043,190	-		CA265_RS04320	0.86	+0.8
1,043,237	+		CA265_RS04320	0.89	+0.3
1,043,258	-		CA265_RS04320	0.90	+0.4
1,043,266	+				-1.3
1,043,285	-				+0.8
1,043,285	-				-1.2
1,043,304	+				-1.7
1,043,305	-				+1.7
1,043,305	-				-1.4
1,043,311	+				-3.3
1,043,334	-				-0.4
1,043,393	+				+1.7
1,043,394	-				+0.7
1,043,465	-				+1.5
1,043,468	-				+1.6
1,043,610	-		CA265_RS04325	0.62	+1.5
1,043,648	+		CA265_RS04325	0.82	+0.7
1,043,654	+		CA265_RS04325	0.85	-0.4
1,043,657	+		CA265_RS04325	0.87	-0.8
1,043,668	+				+0.9
1,043,680	-				+1.1
1,043,699	+				-0.5
1,043,891	+		CA265_RS04330	0.34	+0.9
1,043,904	+		CA265_RS04330	0.38	+1.2
1,043,913	-		CA265_RS04330	0.41	+0.0
1,043,913	-		CA265_RS04330	0.41	+1.6
1,043,929	-		CA265_RS04330	0.47	+2.2
1,043,933	+		CA265_RS04330	0.48	+0.1
1,043,937	+		CA265_RS04330	0.49	-0.4
1,043,964	+		CA265_RS04330	0.59	+0.7
1,044,027	+		CA265_RS04330	0.80	+1.6
1,044,034	-		CA265_RS04330	0.82	+1.4
1,044,034	-		CA265_RS04330	0.82	+0.6
1,044,144	-				+0.4
1,044,145	+				+1.5
1,044,145	+				+3.3
1,044,146	-				+0.9
1,044,168	-		CA265_RS04335	0.12	+1.2
1,044,209	+		CA265_RS04335	0.19	-1.4
1,044,209	+		CA265_RS04335	0.19	+1.2
1,044,209	+		CA265_RS04335	0.19	+0.2
1,044,209	+		CA265_RS04335	0.19	+0.6
1,044,210	-		CA265_RS04335	0.19	+0.1
1,044,210	-		CA265_RS04335	0.19	+0.5
1,044,212	+		CA265_RS04335	0.19	+1.7
1,044,213	-		CA265_RS04335	0.19	-1.6
1,044,247	-		CA265_RS04335	0.25	-0.1
1,044,266	-		CA265_RS04335	0.28	+0.5
1,044,266	-		CA265_RS04335	0.28	+0.7
1,044,290	+		CA265_RS04335	0.32	+0.7
1,044,310	+		CA265_RS04335	0.35	-0.1
1,044,311	-		CA265_RS04335	0.35	-0.5
1,044,315	+		CA265_RS04335	0.36	-0.9
1,044,316	-		CA265_RS04335	0.36	-0.3
1,044,316	-		CA265_RS04335	0.36	+0.6
1,044,349	+		CA265_RS04335	0.41	-0.9
1,044,353	+		CA265_RS04335	0.42	+1.8
1,044,380	+		CA265_RS04335	0.46	+0.5
1,044,380	+		CA265_RS04335	0.46	+0.3
1,044,385	+		CA265_RS04335	0.47	+0.3
1,044,452	-		CA265_RS04335	0.57	-2.2
1,044,493	+		CA265_RS04335	0.64	-0.6
1,044,613	+		CA265_RS04335	0.82	+1.3
1,044,613	+		CA265_RS04335	0.82	-0.1
1,044,613	+		CA265_RS04335	0.82	+0.0
1,044,614	-		CA265_RS04335	0.83	-0.9
1,044,636	-		CA265_RS04335	0.86	+0.0
1,044,636	-				+1.9
1,044,636	-		CA265_RS04335	0.86	+0.7
1,044,766	+		CA265_RS04340	0.26	+0.1
1,044,856	+		CA265_RS04340	0.72	+1.5
1,044,858	+		CA265_RS04340	0.73	+0.1
1,044,858	+		CA265_RS04340	0.73	-3.3
1,044,858	+		CA265_RS04340	0.73	-2.5
1,044,859	-		CA265_RS04340	0.74	-2.4
1,044,860	+		CA265_RS04340	0.74	+0.1
1,044,888	+		CA265_RS04340	0.89	-0.6
1,044,900	+				+1.6
1,044,911	-				-0.1