Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04175

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,007,683	-		CA265_RS04170	0.35	+0.1
1,007,683	-		CA265_RS04170	0.35	+0.5
1,007,731	-		CA265_RS04170	0.38	+1.9
1,007,734	+		CA265_RS04170	0.39	-1.6
1,007,735	-		CA265_RS04170	0.39	-0.5
1,007,812	+		CA265_RS04170	0.45	-0.1
1,007,860	+		CA265_RS04170	0.49	-2.1
1,008,006	-		CA265_RS04170	0.61	-0.1
1,008,006	-		CA265_RS04170	0.61	-0.8
1,008,006	-		CA265_RS04170	0.61	+0.3
1,008,051	-		CA265_RS04170	0.64	-0.6
1,008,052	+		CA265_RS04170	0.64	-0.9
1,008,078	-		CA265_RS04170	0.66	+0.0
1,008,082	+		CA265_RS04170	0.67	+0.9
1,008,140	-		CA265_RS04170	0.71	+0.8
1,008,155	-		CA265_RS04170	0.73	-0.2
1,008,159	+		CA265_RS04170	0.73	+0.7
1,008,317	-		CA265_RS04170	0.86	-0.6
1,008,398	+				-2.1
1,008,399	-				+0.7
1,008,399	-				+0.9
1,008,490	+				+0.9
1,008,490	+				+0.5
1,008,491	-				-1.6
1,008,494	+				+0.5
1,008,502	+				+0.4
1,008,517	-				+0.9
1,008,552	-				+0.3
1,008,565	-				+1.1
1,008,608	+				-1.9
1,008,803	-		CA265_RS04175	0.26	+0.4
1,009,008	+		CA265_RS04175	0.56	+2.2
1,009,067	+		CA265_RS04175	0.64	+0.1
1,009,138	-		CA265_RS04175	0.74	+0.7
1,009,150	-		CA265_RS04175	0.76	-0.4
1,009,157	+		CA265_RS04175	0.77	+0.1
1,009,157	+		CA265_RS04175	0.77	-0.3
1,009,158	-		CA265_RS04175	0.77	-3.7
1,009,179	-		CA265_RS04175	0.80	-0.7
1,009,312	-				+1.1
1,009,316	-				+0.6
1,009,412	+				-0.6
1,009,413	-				-1.6
1,009,413	-				-0.2
1,009,413	-				-1.3
1,009,419	+				+0.4
1,009,471	-				-3.8
1,009,502	+				-0.7
1,009,535	-				+0.1
1,009,535	-				-0.0
1,009,648	-				-1.0
1,009,651	-				-0.6
1,009,652	+				+1.4
1,009,662	-				+0.4
1,009,699	+				+0.3
1,009,738	+				-0.0
1,009,807	+		CA265_RS04180	0.11	+0.6
1,009,807	+		CA265_RS04180	0.11	-1.4
1,009,829	+		CA265_RS04180	0.12	-0.6
1,009,830	-		CA265_RS04180	0.12	-0.9
1,009,830	-		CA265_RS04180	0.12	+0.7
1,009,874	-		CA265_RS04180	0.14	+0.1
1,009,911	+		CA265_RS04180	0.16	+0.8
1,009,962	+		CA265_RS04180	0.18	+1.3
1,009,966	+		CA265_RS04180	0.18	+0.3
1,009,966	+		CA265_RS04180	0.18	-1.4
1,009,966	+		CA265_RS04180	0.18	+0.8
1,010,026	-		CA265_RS04180	0.21	-0.4
1,010,058	+		CA265_RS04180	0.22	+1.6
1,010,059	-		CA265_RS04180	0.22	-1.1
1,010,077	-		CA265_RS04180	0.23	+1.4
1,010,095	+		CA265_RS04180	0.24	+0.4
1,010,096	-		CA265_RS04180	0.24	-1.0
1,010,116	+		CA265_RS04180	0.25	-1.1
1,010,116	+		CA265_RS04180	0.25	+0.3
1,010,116	+		CA265_RS04180	0.25	+1.5
1,010,117	-		CA265_RS04180	0.25	+0.9
1,010,117	-		CA265_RS04180	0.25	+0.6
1,010,117	-		CA265_RS04180	0.25	+0.3
1,010,119	+		CA265_RS04180	0.25	-0.3
1,010,179	+		CA265_RS04180	0.27	+0.5
1,010,205	+		CA265_RS04180	0.28	+1.0
1,010,251	+		CA265_RS04180	0.30	+1.4
1,010,251	+		CA265_RS04180	0.30	-0.0
1,010,252	-		CA265_RS04180	0.30	+1.5