Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04170

Experiment: R2A with nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 6 mM
1,006,334	-		CA265_RS04165	0.61	-2.3
1,006,445	+		CA265_RS04165	0.70	+0.6
1,006,564	+		CA265_RS04165	0.78	+1.0
1,006,607	+		CA265_RS04165	0.81	+0.5
1,006,616	+		CA265_RS04165	0.82	+0.2
1,006,617	-		CA265_RS04165	0.82	-0.5
1,006,620	+		CA265_RS04165	0.82	-2.8
1,006,628	-		CA265_RS04165	0.83	-1.4
1,006,656	+		CA265_RS04165	0.85	-0.5
1,006,693	-		CA265_RS04165	0.88	-1.6
1,006,768	+				+0.1
1,006,782	-				-1.9
1,006,862	-				-2.2
1,006,888	-				+0.9
1,006,889	+				+0.6
1,006,915	-				-0.2
1,006,941	-				+2.2
1,006,988	+				-2.5
1,007,002	+				+0.7
1,007,016	+				+0.4
1,007,265	+				-0.2
1,007,287	+				-1.1
1,007,288	-				-1.0
1,007,299	-				-1.0
1,007,299	-				+1.2
1,007,452	-		CA265_RS04170	0.16	-1.2
1,007,452	-		CA265_RS04170	0.16	+1.7
1,007,475	+		CA265_RS04170	0.18	+0.7
1,007,683	-		CA265_RS04170	0.35	+0.1
1,007,683	-		CA265_RS04170	0.35	+0.5
1,007,731	-		CA265_RS04170	0.38	+1.9
1,007,734	+		CA265_RS04170	0.39	-1.6
1,007,735	-		CA265_RS04170	0.39	-0.5
1,007,812	+		CA265_RS04170	0.45	-0.1
1,007,860	+		CA265_RS04170	0.49	-2.1
1,008,006	-		CA265_RS04170	0.61	-0.1
1,008,006	-		CA265_RS04170	0.61	-0.8
1,008,006	-		CA265_RS04170	0.61	+0.3
1,008,051	-		CA265_RS04170	0.64	-0.6
1,008,052	+		CA265_RS04170	0.64	-0.9
1,008,078	-		CA265_RS04170	0.66	+0.0
1,008,082	+		CA265_RS04170	0.67	+0.9
1,008,140	-		CA265_RS04170	0.71	+0.8
1,008,155	-		CA265_RS04170	0.73	-0.2
1,008,159	+		CA265_RS04170	0.73	+0.7
1,008,317	-		CA265_RS04170	0.86	-0.6
1,008,398	+				-2.1
1,008,399	-				+0.7
1,008,399	-				+0.9
1,008,490	+				+0.9
1,008,490	+				+0.5
1,008,491	-				-1.6
1,008,494	+				+0.5
1,008,502	+				+0.4
1,008,517	-				+0.9
1,008,552	-				+0.3
1,008,565	-				+1.1
1,008,608	+				-1.9
1,008,803	-		CA265_RS04175	0.26	+0.4
1,009,008	+		CA265_RS04175	0.56	+2.2
1,009,067	+		CA265_RS04175	0.64	+0.1
1,009,138	-		CA265_RS04175	0.74	+0.7
1,009,150	-		CA265_RS04175	0.76	-0.4
1,009,157	+		CA265_RS04175	0.77	+0.1
1,009,157	+		CA265_RS04175	0.77	-0.3
1,009,158	-		CA265_RS04175	0.77	-3.7
1,009,179	-		CA265_RS04175	0.80	-0.7
1,009,312	-				+1.1
1,009,316	-				+0.6
1,009,412	+				-0.6
1,009,413	-				-1.6
1,009,413	-				-0.2
1,009,413	-				-1.3
1,009,419	+				+0.4
1,009,471	-				-3.8