Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03250

Experiment: R2A with nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03240 and CA265_RS03245 overlap by 22 nucleotidesCA265_RS03245 and CA265_RS03250 overlap by 4 nucleotidesCA265_RS03250 and CA265_RS03255 are separated by 251 nucleotides CA265_RS03240: CA265_RS03240 - hypothetical protein, at 796,413 to 797,060 _RS03240 CA265_RS03245: CA265_RS03245 - two-component sensor histidine kinase, at 797,039 to 797,824 _RS03245 CA265_RS03250: CA265_RS03250 - DNA-binding response regulator, at 797,821 to 798,453 _RS03250 CA265_RS03255: CA265_RS03255 - glycerophosphodiester phosphodiesterase, at 798,705 to 799,625 _RS03255 Position (kb) 797 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 796.825 kb on - strand, within CA265_RS03240at 796.857 kb on - strand, within CA265_RS03240at 796.881 kb on + strand, within CA265_RS03240at 796.882 kb on - strand, within CA265_RS03240at 796.956 kb on + strand, within CA265_RS03240at 796.957 kb on - strand, within CA265_RS03240at 796.958 kb on + strand, within CA265_RS03240at 796.959 kb on - strand, within CA265_RS03240at 796.959 kb on - strand, within CA265_RS03240at 796.978 kb on - strand, within CA265_RS03240at 797.008 kb on + strandat 797.009 kb on - strandat 797.016 kb on - strandat 797.017 kb on + strandat 797.020 kb on + strandat 797.037 kb on - strandat 797.058 kb on + strandat 797.118 kb on - strand, within CA265_RS03245at 797.212 kb on - strand, within CA265_RS03245at 797.357 kb on + strand, within CA265_RS03245at 797.422 kb on + strand, within CA265_RS03245at 797.423 kb on - strand, within CA265_RS03245at 797.424 kb on + strand, within CA265_RS03245at 797.452 kb on - strand, within CA265_RS03245at 797.491 kb on + strand, within CA265_RS03245at 797.497 kb on - strand, within CA265_RS03245at 797.550 kb on + strand, within CA265_RS03245at 797.550 kb on + strand, within CA265_RS03245at 797.551 kb on - strand, within CA265_RS03245at 797.608 kb on + strand, within CA265_RS03245at 797.609 kb on - strand, within CA265_RS03245at 797.625 kb on + strand, within CA265_RS03245at 797.626 kb on - strand, within CA265_RS03245at 797.688 kb on - strand, within CA265_RS03245at 797.712 kb on + strand, within CA265_RS03245at 797.713 kb on - strand, within CA265_RS03245at 797.797 kb on + strandat 797.798 kb on - strandat 797.834 kb on + strandat 797.914 kb on + strand, within CA265_RS03250at 797.914 kb on + strand, within CA265_RS03250at 797.965 kb on - strand, within CA265_RS03250at 797.965 kb on - strand, within CA265_RS03250at 797.994 kb on + strand, within CA265_RS03250at 797.995 kb on - strand, within CA265_RS03250at 797.997 kb on + strand, within CA265_RS03250at 797.998 kb on - strand, within CA265_RS03250at 797.998 kb on - strand, within CA265_RS03250at 798.027 kb on - strand, within CA265_RS03250at 798.102 kb on + strand, within CA265_RS03250at 798.103 kb on - strand, within CA265_RS03250at 798.190 kb on - strand, within CA265_RS03250at 798.320 kb on - strand, within CA265_RS03250at 798.322 kb on - strand, within CA265_RS03250at 798.451 kb on + strandat 798.458 kb on + strandat 798.458 kb on + strandat 798.495 kb on + strandat 798.510 kb on + strandat 798.511 kb on - strandat 798.522 kb on - strandat 798.540 kb on - strandat 798.548 kb on + strandat 798.548 kb on + strandat 798.552 kb on - strandat 798.555 kb on + strandat 798.555 kb on + strandat 798.556 kb on - strandat 798.556 kb on - strandat 798.560 kb on - strandat 798.627 kb on - strandat 798.735 kb on - strandat 798.735 kb on - strandat 798.784 kb on - strandat 798.784 kb on - strandat 798.784 kb on - strandat 798.785 kb on + strandat 798.798 kb on - strand, within CA265_RS03255at 798.812 kb on - strand, within CA265_RS03255at 798.964 kb on - strand, within CA265_RS03255at 798.990 kb on - strand, within CA265_RS03255at 799.050 kb on + strand, within CA265_RS03255at 799.061 kb on - strand, within CA265_RS03255at 799.071 kb on - strand, within CA265_RS03255at 799.121 kb on - strand, within CA265_RS03255at 799.129 kb on + strand, within CA265_RS03255at 799.129 kb on + strand, within CA265_RS03255at 799.130 kb on - strand, within CA265_RS03255at 799.130 kb on - strand, within CA265_RS03255at 799.133 kb on - strand, within CA265_RS03255at 799.251 kb on + strand, within CA265_RS03255at 799.251 kb on + strand, within CA265_RS03255at 799.252 kb on - strand, within CA265_RS03255at 799.252 kb on - strand, within CA265_RS03255at 799.276 kb on + strand, within CA265_RS03255at 799.277 kb on - strand, within CA265_RS03255at 799.342 kb on + strand, within CA265_RS03255at 799.343 kb on - strand, within CA265_RS03255at 799.375 kb on + strand, within CA265_RS03255at 799.376 kb on - strand, within CA265_RS03255at 799.391 kb on - strand, within CA265_RS03255at 799.420 kb on - strand, within CA265_RS03255at 799.440 kb on - strand, within CA265_RS03255at 799.451 kb on - strand, within CA265_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM
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796,825 - CA265_RS03240 0.64 -1.0
796,857 - CA265_RS03240 0.69 +1.6
796,881 + CA265_RS03240 0.72 -1.2
796,882 - CA265_RS03240 0.72 -2.9
796,956 + CA265_RS03240 0.84 -0.5
796,957 - CA265_RS03240 0.84 +0.6
796,958 + CA265_RS03240 0.84 -2.4
796,959 - CA265_RS03240 0.84 +1.2
796,959 - CA265_RS03240 0.84 -0.8
796,978 - CA265_RS03240 0.87 -1.6
797,008 + +0.1
797,009 - +1.0
797,016 - -0.5
797,017 + +1.2
797,020 + +0.9
797,037 - +0.7
797,058 + -1.9
797,118 - CA265_RS03245 0.10 +0.7
797,212 - CA265_RS03245 0.22 -0.2
797,357 + CA265_RS03245 0.40 -0.0
797,422 + CA265_RS03245 0.49 +0.7
797,423 - CA265_RS03245 0.49 +0.1
797,424 + CA265_RS03245 0.49 +0.9
797,452 - CA265_RS03245 0.53 +1.0
797,491 + CA265_RS03245 0.58 -0.9
797,497 - CA265_RS03245 0.58 -0.1
797,550 + CA265_RS03245 0.65 +0.0
797,550 + CA265_RS03245 0.65 -0.4
797,551 - CA265_RS03245 0.65 -0.4
797,608 + CA265_RS03245 0.72 +1.1
797,609 - CA265_RS03245 0.73 -1.0
797,625 + CA265_RS03245 0.75 +0.7
797,626 - CA265_RS03245 0.75 -0.0
797,688 - CA265_RS03245 0.83 -0.2
797,712 + CA265_RS03245 0.86 -1.9
797,713 - CA265_RS03245 0.86 +0.6
797,797 + +1.3
797,798 - +1.2
797,834 + +0.1
797,914 + CA265_RS03250 0.15 -0.3
797,914 + CA265_RS03250 0.15 -0.8
797,965 - CA265_RS03250 0.23 +0.8
797,965 - CA265_RS03250 0.23 -3.1
797,994 + CA265_RS03250 0.27 +0.7
797,995 - CA265_RS03250 0.27 +2.8
797,997 + CA265_RS03250 0.28 -0.7
797,998 - CA265_RS03250 0.28 +0.1
797,998 - CA265_RS03250 0.28 -0.8
798,027 - CA265_RS03250 0.33 -3.2
798,102 + CA265_RS03250 0.44 -1.0
798,103 - CA265_RS03250 0.45 -1.7
798,190 - CA265_RS03250 0.58 -0.5
798,320 - CA265_RS03250 0.79 +0.5
798,322 - CA265_RS03250 0.79 -1.2
798,451 + -0.0
798,458 + +0.4
798,458 + -2.1
798,495 + +0.2
798,510 + +0.1
798,511 - -0.0
798,522 - -0.5
798,540 - +0.5
798,548 + -0.0
798,548 + -1.3
798,552 - +0.8
798,555 + -0.6
798,555 + -1.2
798,556 - -1.6
798,556 - +1.6
798,560 - +1.6
798,627 - +0.8
798,735 - +0.1
798,735 - -1.6
798,784 - -2.4
798,784 - +2.5
798,784 - +1.1
798,785 + -1.3
798,798 - CA265_RS03255 0.10 -1.7
798,812 - CA265_RS03255 0.12 +0.9
798,964 - CA265_RS03255 0.28 -0.3
798,990 - CA265_RS03255 0.31 -1.0
799,050 + CA265_RS03255 0.37 -0.5
799,061 - CA265_RS03255 0.39 +0.8
799,071 - CA265_RS03255 0.40 -3.5
799,121 - CA265_RS03255 0.45 -1.2
799,129 + CA265_RS03255 0.46 +0.5
799,129 + CA265_RS03255 0.46 -0.7
799,130 - CA265_RS03255 0.46 +0.8
799,130 - CA265_RS03255 0.46 -0.8
799,133 - CA265_RS03255 0.46 +1.2
799,251 + CA265_RS03255 0.59 -1.8
799,251 + CA265_RS03255 0.59 -3.2
799,252 - CA265_RS03255 0.59 -1.6
799,252 - CA265_RS03255 0.59 +0.4
799,276 + CA265_RS03255 0.62 -1.1
799,277 - CA265_RS03255 0.62 -0.6
799,342 + CA265_RS03255 0.69 -1.1
799,343 - CA265_RS03255 0.69 +0.4
799,375 + CA265_RS03255 0.73 -0.2
799,376 - CA265_RS03255 0.73 -2.1
799,391 - CA265_RS03255 0.74 -0.2
799,420 - CA265_RS03255 0.78 +2.0
799,440 - CA265_RS03255 0.80 -2.2
799,451 - CA265_RS03255 0.81 +1.0

Or see this region's nucleotide sequence