Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03050

Experiment: R2A with nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03045 and CA265_RS03050 are separated by 24 nucleotidesCA265_RS03050 and CA265_RS03055 are separated by 201 nucleotides CA265_RS03045: CA265_RS03045 - hypothetical protein, at 756,625 to 757,551 _RS03045 CA265_RS03050: CA265_RS03050 - hypothetical protein, at 757,576 to 758,073 _RS03050 CA265_RS03055: CA265_RS03055 - two-component sensor histidine kinase, at 758,275 to 759,627 _RS03055 Position (kb) 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 756.683 kb on - strandat 756.688 kb on - strandat 756.724 kb on - strand, within CA265_RS03045at 756.756 kb on + strand, within CA265_RS03045at 756.825 kb on + strand, within CA265_RS03045at 756.851 kb on + strand, within CA265_RS03045at 756.909 kb on + strand, within CA265_RS03045at 756.917 kb on + strand, within CA265_RS03045at 756.918 kb on - strand, within CA265_RS03045at 756.918 kb on - strand, within CA265_RS03045at 756.926 kb on + strand, within CA265_RS03045at 756.973 kb on - strand, within CA265_RS03045at 756.978 kb on + strand, within CA265_RS03045at 756.978 kb on + strand, within CA265_RS03045at 756.978 kb on + strand, within CA265_RS03045at 756.982 kb on + strand, within CA265_RS03045at 757.010 kb on - strand, within CA265_RS03045at 757.055 kb on - strand, within CA265_RS03045at 757.078 kb on + strand, within CA265_RS03045at 757.137 kb on - strand, within CA265_RS03045at 757.162 kb on - strand, within CA265_RS03045at 757.183 kb on + strand, within CA265_RS03045at 757.190 kb on + strand, within CA265_RS03045at 757.191 kb on - strand, within CA265_RS03045at 757.288 kb on + strand, within CA265_RS03045at 757.344 kb on + strand, within CA265_RS03045at 757.344 kb on + strand, within CA265_RS03045at 757.345 kb on - strand, within CA265_RS03045at 757.360 kb on - strand, within CA265_RS03045at 757.451 kb on + strand, within CA265_RS03045at 757.453 kb on + strand, within CA265_RS03045at 757.454 kb on - strand, within CA265_RS03045at 757.457 kb on - strand, within CA265_RS03045at 757.464 kb on + strandat 757.465 kb on - strandat 757.468 kb on + strandat 757.518 kb on + strandat 757.519 kb on - strandat 757.519 kb on - strandat 757.521 kb on - strandat 757.521 kb on - strandat 757.707 kb on + strand, within CA265_RS03050at 757.712 kb on + strand, within CA265_RS03050at 757.713 kb on - strand, within CA265_RS03050at 757.713 kb on - strand, within CA265_RS03050at 757.716 kb on + strand, within CA265_RS03050at 757.748 kb on + strand, within CA265_RS03050at 757.803 kb on + strand, within CA265_RS03050at 757.817 kb on + strand, within CA265_RS03050at 757.931 kb on - strand, within CA265_RS03050at 757.935 kb on + strand, within CA265_RS03050at 757.936 kb on - strand, within CA265_RS03050at 757.959 kb on + strand, within CA265_RS03050at 758.060 kb on - strandat 758.079 kb on + strandat 758.080 kb on - strandat 758.200 kb on - strandat 758.200 kb on - strandat 758.207 kb on + strandat 758.230 kb on + strandat 758.231 kb on - strandat 758.277 kb on - strandat 758.338 kb on + strandat 758.343 kb on + strandat 758.353 kb on + strandat 758.365 kb on - strandat 758.380 kb on + strandat 758.380 kb on + strandat 758.394 kb on - strandat 758.427 kb on - strand, within CA265_RS03055at 758.427 kb on - strand, within CA265_RS03055at 758.440 kb on + strand, within CA265_RS03055at 758.441 kb on - strand, within CA265_RS03055at 758.442 kb on + strand, within CA265_RS03055at 758.443 kb on - strand, within CA265_RS03055at 758.452 kb on - strand, within CA265_RS03055at 758.485 kb on + strand, within CA265_RS03055at 758.503 kb on - strand, within CA265_RS03055at 758.520 kb on + strand, within CA265_RS03055at 758.523 kb on + strand, within CA265_RS03055at 758.524 kb on - strand, within CA265_RS03055at 758.554 kb on - strand, within CA265_RS03055at 758.554 kb on - strand, within CA265_RS03055at 758.571 kb on + strand, within CA265_RS03055at 758.620 kb on + strand, within CA265_RS03055at 758.621 kb on - strand, within CA265_RS03055at 758.646 kb on + strand, within CA265_RS03055at 758.647 kb on - strand, within CA265_RS03055at 758.697 kb on + strand, within CA265_RS03055at 758.725 kb on + strand, within CA265_RS03055at 758.725 kb on + strand, within CA265_RS03055at 758.793 kb on + strand, within CA265_RS03055at 758.794 kb on - strand, within CA265_RS03055at 758.800 kb on + strand, within CA265_RS03055at 758.800 kb on + strand, within CA265_RS03055at 758.896 kb on - strand, within CA265_RS03055at 758.914 kb on + strand, within CA265_RS03055at 758.914 kb on + strand, within CA265_RS03055at 758.915 kb on - strand, within CA265_RS03055at 758.937 kb on + strand, within CA265_RS03055at 759.037 kb on + strand, within CA265_RS03055at 759.038 kb on - strand, within CA265_RS03055at 759.072 kb on + strand, within CA265_RS03055

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM
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756,683 - +0.5
756,688 - +1.5
756,724 - CA265_RS03045 0.11 -0.3
756,756 + CA265_RS03045 0.14 +0.3
756,825 + CA265_RS03045 0.22 +0.6
756,851 + CA265_RS03045 0.24 -0.6
756,909 + CA265_RS03045 0.31 +1.2
756,917 + CA265_RS03045 0.31 +0.3
756,918 - CA265_RS03045 0.32 -1.5
756,918 - CA265_RS03045 0.32 +0.4
756,926 + CA265_RS03045 0.32 +1.1
756,973 - CA265_RS03045 0.38 +0.2
756,978 + CA265_RS03045 0.38 -2.5
756,978 + CA265_RS03045 0.38 +0.4
756,978 + CA265_RS03045 0.38 +0.9
756,982 + CA265_RS03045 0.39 +0.3
757,010 - CA265_RS03045 0.42 +0.4
757,055 - CA265_RS03045 0.46 +0.8
757,078 + CA265_RS03045 0.49 -1.0
757,137 - CA265_RS03045 0.55 -0.5
757,162 - CA265_RS03045 0.58 +1.0
757,183 + CA265_RS03045 0.60 -0.2
757,190 + CA265_RS03045 0.61 +1.0
757,191 - CA265_RS03045 0.61 -0.3
757,288 + CA265_RS03045 0.72 +0.2
757,344 + CA265_RS03045 0.78 -0.5
757,344 + CA265_RS03045 0.78 -0.0
757,345 - CA265_RS03045 0.78 -1.5
757,360 - CA265_RS03045 0.79 -0.1
757,451 + CA265_RS03045 0.89 +0.2
757,453 + CA265_RS03045 0.89 -0.0
757,454 - CA265_RS03045 0.89 +1.3
757,457 - CA265_RS03045 0.90 -0.1
757,464 + -0.0
757,465 - +0.1
757,468 + +0.1
757,518 + -2.5
757,519 - -3.1
757,519 - +0.1
757,521 - -3.4
757,521 - -0.4
757,707 + CA265_RS03050 0.26 +1.2
757,712 + CA265_RS03050 0.27 -0.8
757,713 - CA265_RS03050 0.28 +1.4
757,713 - CA265_RS03050 0.28 -0.5
757,716 + CA265_RS03050 0.28 +0.4
757,748 + CA265_RS03050 0.35 +0.5
757,803 + CA265_RS03050 0.46 +0.3
757,817 + CA265_RS03050 0.48 +0.1
757,931 - CA265_RS03050 0.71 -1.2
757,935 + CA265_RS03050 0.72 -0.1
757,936 - CA265_RS03050 0.72 -0.7
757,959 + CA265_RS03050 0.77 +1.6
758,060 - -0.3
758,079 + -0.2
758,080 - +0.4
758,200 - +0.3
758,200 - +1.0
758,207 + -1.3
758,230 + +0.0
758,231 - -1.6
758,277 - +1.3
758,338 + -2.6
758,343 + +2.2
758,353 + -2.3
758,365 - -0.6
758,380 + -0.1
758,380 + +0.2
758,394 - +0.7
758,427 - CA265_RS03055 0.11 +0.3
758,427 - CA265_RS03055 0.11 -0.6
758,440 + CA265_RS03055 0.12 -0.0
758,441 - CA265_RS03055 0.12 +0.3
758,442 + CA265_RS03055 0.12 -0.3
758,443 - CA265_RS03055 0.12 -1.5
758,452 - CA265_RS03055 0.13 +0.8
758,485 + CA265_RS03055 0.16 +0.2
758,503 - CA265_RS03055 0.17 +0.9
758,520 + CA265_RS03055 0.18 +0.7
758,523 + CA265_RS03055 0.18 +0.3
758,524 - CA265_RS03055 0.18 -1.8
758,554 - CA265_RS03055 0.21 +1.2
758,554 - CA265_RS03055 0.21 +0.8
758,571 + CA265_RS03055 0.22 +0.8
758,620 + CA265_RS03055 0.25 +0.7
758,621 - CA265_RS03055 0.26 +0.3
758,646 + CA265_RS03055 0.27 +0.3
758,647 - CA265_RS03055 0.27 -1.9
758,697 + CA265_RS03055 0.31 -2.3
758,725 + CA265_RS03055 0.33 +0.9
758,725 + CA265_RS03055 0.33 +0.4
758,793 + CA265_RS03055 0.38 -0.6
758,794 - CA265_RS03055 0.38 +0.0
758,800 + CA265_RS03055 0.39 -0.8
758,800 + CA265_RS03055 0.39 +0.6
758,896 - CA265_RS03055 0.46 +1.2
758,914 + CA265_RS03055 0.47 +0.7
758,914 + CA265_RS03055 0.47 +1.8
758,915 - CA265_RS03055 0.47 -0.1
758,937 + CA265_RS03055 0.49 +1.9
759,037 + CA265_RS03055 0.56 -0.2
759,038 - CA265_RS03055 0.56 +0.8
759,072 + CA265_RS03055 0.59 +0.5

Or see this region's nucleotide sequence