Experiment: R2A with nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02085 and CA265_RS02090 are separated by 163 nucleotides CA265_RS02090 and CA265_RS02095 overlap by 1 nucleotides
CA265_RS02085: CA265_RS02085 - hypothetical protein, at 527,450 to 527,839
_RS02085
CA265_RS02090: CA265_RS02090 - ABC transporter ATP-binding protein, at 528,003 to 528,629
_RS02090
CA265_RS02095: CA265_RS02095 - ABC transporter permease, at 528,629 to 529,843
_RS02095
Position (kb) 528
529 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 527.077 kb on + strand at 527.086 kb on + strand at 527.146 kb on + strand at 527.465 kb on + strand at 527.517 kb on + strand, within CA265_RS02085 at 527.518 kb on - strand, within CA265_RS02085 at 527.620 kb on - strand, within CA265_RS02085 at 527.630 kb on - strand, within CA265_RS02085 at 527.641 kb on - strand, within CA265_RS02085 at 527.671 kb on + strand, within CA265_RS02085 at 527.693 kb on - strand, within CA265_RS02085 at 527.693 kb on - strand, within CA265_RS02085 at 527.713 kb on - strand, within CA265_RS02085 at 527.777 kb on - strand, within CA265_RS02085 at 527.861 kb on - strand at 527.869 kb on - strand at 527.902 kb on - strand at 527.914 kb on + strand at 527.915 kb on - strand at 527.938 kb on - strand at 527.945 kb on + strand at 528.022 kb on + strand at 528.033 kb on + strand at 528.135 kb on - strand, within CA265_RS02090 at 528.141 kb on - strand, within CA265_RS02090 at 528.196 kb on + strand, within CA265_RS02090 at 528.197 kb on - strand, within CA265_RS02090 at 528.197 kb on - strand, within CA265_RS02090 at 528.205 kb on + strand, within CA265_RS02090 at 528.206 kb on - strand at 528.488 kb on + strand, within CA265_RS02090 at 528.606 kb on - strand at 528.619 kb on - strand at 528.622 kb on + strand at 528.623 kb on - strand at 528.671 kb on - strand at 528.676 kb on - strand at 528.676 kb on - strand at 528.819 kb on + strand, within CA265_RS02095 at 528.820 kb on - strand, within CA265_RS02095 at 528.831 kb on + strand, within CA265_RS02095 at 528.842 kb on + strand, within CA265_RS02095 at 528.887 kb on + strand, within CA265_RS02095 at 528.989 kb on - strand, within CA265_RS02095 at 529.045 kb on - strand, within CA265_RS02095 at 529.138 kb on + strand, within CA265_RS02095 at 529.151 kb on + strand, within CA265_RS02095 at 529.151 kb on + strand, within CA265_RS02095 at 529.152 kb on - strand, within CA265_RS02095 at 529.152 kb on - strand, within CA265_RS02095 at 529.186 kb on + strand, within CA265_RS02095 at 529.214 kb on - strand, within CA265_RS02095 at 529.228 kb on + strand, within CA265_RS02095 at 529.228 kb on + strand, within CA265_RS02095 at 529.228 kb on + strand, within CA265_RS02095 at 529.300 kb on + strand, within CA265_RS02095 at 529.329 kb on - strand, within CA265_RS02095 at 529.379 kb on - strand, within CA265_RS02095 at 529.423 kb on - strand, within CA265_RS02095 at 529.450 kb on + strand, within CA265_RS02095 at 529.478 kb on - strand, within CA265_RS02095 at 529.538 kb on + strand, within CA265_RS02095 at 529.539 kb on - strand, within CA265_RS02095 at 529.619 kb on - strand, within CA265_RS02095 at 529.624 kb on + strand, within CA265_RS02095
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM remove 527,077 + +1.1 527,086 + -2.3 527,146 + +0.7 527,465 + -1.3 527,517 + CA265_RS02085 0.17 +1.0 527,518 - CA265_RS02085 0.17 -1.2 527,620 - CA265_RS02085 0.44 -0.5 527,630 - CA265_RS02085 0.46 -1.7 527,641 - CA265_RS02085 0.49 +0.3 527,671 + CA265_RS02085 0.57 -0.6 527,693 - CA265_RS02085 0.62 -3.9 527,693 - CA265_RS02085 0.62 +0.2 527,713 - CA265_RS02085 0.67 -2.3 527,777 - CA265_RS02085 0.84 +1.3 527,861 - +1.3 527,869 - +1.0 527,902 - +0.0 527,914 + -0.5 527,915 - -2.6 527,938 - -1.2 527,945 + +0.7 528,022 + -1.0 528,033 + -1.4 528,135 - CA265_RS02090 0.21 +1.4 528,141 - CA265_RS02090 0.22 -1.0 528,196 + CA265_RS02090 0.31 +0.8 528,197 - CA265_RS02090 0.31 +0.7 528,197 - CA265_RS02090 0.31 -0.2 528,205 + CA265_RS02090 0.32 +2.4 528,206 - +0.1 528,488 + CA265_RS02090 0.77 -0.8 528,606 - -0.8 528,619 - -0.2 528,622 + +1.7 528,623 - +0.8 528,671 - +0.5 528,676 - -0.5 528,676 - +0.4 528,819 + CA265_RS02095 0.16 -0.1 528,820 - CA265_RS02095 0.16 +0.2 528,831 + CA265_RS02095 0.17 -0.9 528,842 + CA265_RS02095 0.18 -3.0 528,887 + CA265_RS02095 0.21 -0.2 528,989 - CA265_RS02095 0.30 +2.6 529,045 - CA265_RS02095 0.34 +0.0 529,138 + CA265_RS02095 0.42 -0.7 529,151 + CA265_RS02095 0.43 +0.2 529,151 + CA265_RS02095 0.43 +0.6 529,152 - CA265_RS02095 0.43 +0.6 529,152 - CA265_RS02095 0.43 +0.6 529,186 + CA265_RS02095 0.46 -1.2 529,214 - CA265_RS02095 0.48 -2.1 529,228 + CA265_RS02095 0.49 -0.1 529,228 + CA265_RS02095 0.49 -0.2 529,228 + CA265_RS02095 0.49 +1.7 529,300 + CA265_RS02095 0.55 -0.0 529,329 - CA265_RS02095 0.58 +1.0 529,379 - CA265_RS02095 0.62 +0.0 529,423 - CA265_RS02095 0.65 -3.4 529,450 + CA265_RS02095 0.68 -0.4 529,478 - CA265_RS02095 0.70 +0.9 529,538 + CA265_RS02095 0.75 -1.6 529,539 - CA265_RS02095 0.75 +0.4 529,619 - CA265_RS02095 0.81 +1.5 529,624 + CA265_RS02095 0.82 -0.2
Or see this region's nucleotide sequence