Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01720

Experiment: R2A with nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01710 and CA265_RS01715 are separated by 2 nucleotidesCA265_RS01715 and CA265_RS01720 overlap by 8 nucleotidesCA265_RS01720 and CA265_RS01725 overlap by 1 nucleotidesCA265_RS01725 and CA265_RS01730 overlap by 8 nucleotides CA265_RS01710: CA265_RS01710 - hypothetical protein, at 435,522 to 436,532 _RS01710 CA265_RS01715: CA265_RS01715 - hypothetical protein, at 436,535 to 437,284 _RS01715 CA265_RS01720: CA265_RS01720 - hypothetical protein, at 437,277 to 437,942 _RS01720 CA265_RS01725: CA265_RS01725 - hypothetical protein, at 437,942 to 438,823 _RS01725 CA265_RS01730: CA265_RS01730 - hypothetical protein, at 438,816 to 439,811 _RS01730 Position (kb) 437 438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 436.310 kb on - strandat 436.367 kb on - strand, within CA265_RS01710at 436.367 kb on - strand, within CA265_RS01710at 436.370 kb on + strand, within CA265_RS01710at 436.380 kb on - strand, within CA265_RS01710at 436.513 kb on - strandat 436.546 kb on + strandat 436.553 kb on + strandat 436.566 kb on + strandat 436.566 kb on + strandat 436.585 kb on + strandat 436.615 kb on + strand, within CA265_RS01715at 436.696 kb on + strand, within CA265_RS01715at 436.735 kb on + strand, within CA265_RS01715at 436.735 kb on + strand, within CA265_RS01715at 436.737 kb on - strand, within CA265_RS01715at 436.859 kb on + strand, within CA265_RS01715at 436.873 kb on - strand, within CA265_RS01715at 436.957 kb on + strand, within CA265_RS01715at 437.066 kb on + strand, within CA265_RS01715at 437.066 kb on + strand, within CA265_RS01715at 437.264 kb on + strandat 437.265 kb on - strandat 437.275 kb on + strandat 437.276 kb on - strandat 437.412 kb on + strand, within CA265_RS01720at 437.413 kb on - strand, within CA265_RS01720at 437.436 kb on - strand, within CA265_RS01720at 437.448 kb on - strand, within CA265_RS01720at 437.456 kb on + strand, within CA265_RS01720at 437.480 kb on + strand, within CA265_RS01720at 437.480 kb on + strand, within CA265_RS01720at 437.481 kb on - strand, within CA265_RS01720at 437.529 kb on + strand, within CA265_RS01720at 437.537 kb on - strand, within CA265_RS01720at 437.575 kb on - strand, within CA265_RS01720at 437.575 kb on - strand, within CA265_RS01720at 437.606 kb on + strand, within CA265_RS01720at 437.649 kb on + strand, within CA265_RS01720at 437.649 kb on + strand, within CA265_RS01720at 437.650 kb on - strand, within CA265_RS01720at 437.678 kb on - strand, within CA265_RS01720at 437.703 kb on - strand, within CA265_RS01720at 437.711 kb on + strand, within CA265_RS01720at 437.712 kb on - strand, within CA265_RS01720at 437.730 kb on + strand, within CA265_RS01720at 437.849 kb on + strand, within CA265_RS01720at 437.863 kb on - strand, within CA265_RS01720at 437.943 kb on + strandat 437.988 kb on - strandat 438.040 kb on + strand, within CA265_RS01725at 438.040 kb on + strand, within CA265_RS01725at 438.040 kb on + strand, within CA265_RS01725at 438.040 kb on + strand, within CA265_RS01725at 438.047 kb on - strand, within CA265_RS01725at 438.064 kb on - strand, within CA265_RS01725at 438.118 kb on + strand, within CA265_RS01725at 438.136 kb on - strand, within CA265_RS01725at 438.137 kb on + strand, within CA265_RS01725at 438.228 kb on + strand, within CA265_RS01725at 438.236 kb on - strand, within CA265_RS01725at 438.236 kb on - strand, within CA265_RS01725at 438.238 kb on - strand, within CA265_RS01725at 438.240 kb on + strand, within CA265_RS01725at 438.247 kb on + strand, within CA265_RS01725at 438.251 kb on + strand, within CA265_RS01725at 438.272 kb on + strand, within CA265_RS01725at 438.273 kb on - strand, within CA265_RS01725at 438.277 kb on + strand, within CA265_RS01725at 438.279 kb on + strand, within CA265_RS01725at 438.312 kb on + strand, within CA265_RS01725at 438.312 kb on + strand, within CA265_RS01725at 438.313 kb on - strand, within CA265_RS01725at 438.313 kb on - strand, within CA265_RS01725at 438.313 kb on - strand, within CA265_RS01725at 438.320 kb on + strand, within CA265_RS01725at 438.320 kb on + strand, within CA265_RS01725at 438.357 kb on - strand, within CA265_RS01725at 438.413 kb on - strand, within CA265_RS01725at 438.436 kb on + strand, within CA265_RS01725at 438.444 kb on + strand, within CA265_RS01725at 438.508 kb on + strand, within CA265_RS01725at 438.509 kb on - strand, within CA265_RS01725at 438.510 kb on + strand, within CA265_RS01725at 438.677 kb on + strand, within CA265_RS01725at 438.841 kb on - strandat 438.843 kb on - strandat 438.849 kb on - strandat 438.869 kb on + strandat 438.911 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM
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436,310 - -0.4
436,367 - CA265_RS01710 0.84 +0.8
436,367 - CA265_RS01710 0.84 +0.7
436,370 + CA265_RS01710 0.84 -1.4
436,380 - CA265_RS01710 0.85 -2.0
436,513 - +0.3
436,546 + +0.0
436,553 + -1.4
436,566 + -0.8
436,566 + -3.0
436,585 + -0.4
436,615 + CA265_RS01715 0.11 -0.5
436,696 + CA265_RS01715 0.21 -0.1
436,735 + CA265_RS01715 0.27 +0.5
436,735 + CA265_RS01715 0.27 -0.1
436,737 - CA265_RS01715 0.27 -0.1
436,859 + CA265_RS01715 0.43 -0.3
436,873 - CA265_RS01715 0.45 -0.4
436,957 + CA265_RS01715 0.56 -0.8
437,066 + CA265_RS01715 0.71 -1.0
437,066 + CA265_RS01715 0.71 -1.1
437,264 + +0.6
437,265 - -1.1
437,275 + +0.2
437,276 - -0.4
437,412 + CA265_RS01720 0.20 -0.1
437,413 - CA265_RS01720 0.20 +0.0
437,436 - CA265_RS01720 0.24 +0.0
437,448 - CA265_RS01720 0.26 +0.0
437,456 + CA265_RS01720 0.27 -2.5
437,480 + CA265_RS01720 0.30 +0.0
437,480 + CA265_RS01720 0.30 -0.2
437,481 - CA265_RS01720 0.31 -0.7
437,529 + CA265_RS01720 0.38 -2.7
437,537 - CA265_RS01720 0.39 -0.2
437,575 - CA265_RS01720 0.45 +0.4
437,575 - CA265_RS01720 0.45 -3.5
437,606 + CA265_RS01720 0.49 -1.5
437,649 + CA265_RS01720 0.56 -0.0
437,649 + CA265_RS01720 0.56 +0.5
437,650 - CA265_RS01720 0.56 -0.2
437,678 - CA265_RS01720 0.60 -0.1
437,703 - CA265_RS01720 0.64 -0.5
437,711 + CA265_RS01720 0.65 -1.6
437,712 - CA265_RS01720 0.65 +0.1
437,730 + CA265_RS01720 0.68 -0.1
437,849 + CA265_RS01720 0.86 +1.1
437,863 - CA265_RS01720 0.88 -3.8
437,943 + -1.0
437,988 - -0.1
438,040 + CA265_RS01725 0.11 -1.4
438,040 + CA265_RS01725 0.11 -1.4
438,040 + CA265_RS01725 0.11 +0.4
438,040 + CA265_RS01725 0.11 +1.1
438,047 - CA265_RS01725 0.12 -1.8
438,064 - CA265_RS01725 0.14 -0.3
438,118 + CA265_RS01725 0.20 -1.8
438,136 - CA265_RS01725 0.22 -0.3
438,137 + CA265_RS01725 0.22 +0.7
438,228 + CA265_RS01725 0.32 -0.6
438,236 - CA265_RS01725 0.33 -0.6
438,236 - CA265_RS01725 0.33 +0.1
438,238 - CA265_RS01725 0.34 -2.4
438,240 + CA265_RS01725 0.34 -2.6
438,247 + CA265_RS01725 0.35 +0.6
438,251 + CA265_RS01725 0.35 +0.0
438,272 + CA265_RS01725 0.37 -1.9
438,273 - CA265_RS01725 0.38 -1.4
438,277 + CA265_RS01725 0.38 +0.3
438,279 + CA265_RS01725 0.38 -2.7
438,312 + CA265_RS01725 0.42 +0.2
438,312 + CA265_RS01725 0.42 -1.7
438,313 - CA265_RS01725 0.42 -2.9
438,313 - CA265_RS01725 0.42 -1.2
438,313 - CA265_RS01725 0.42 +0.4
438,320 + CA265_RS01725 0.43 +0.3
438,320 + CA265_RS01725 0.43 -0.1
438,357 - CA265_RS01725 0.47 -0.6
438,413 - CA265_RS01725 0.53 +0.2
438,436 + CA265_RS01725 0.56 +0.3
438,444 + CA265_RS01725 0.57 +0.2
438,508 + CA265_RS01725 0.64 -1.4
438,509 - CA265_RS01725 0.64 -1.1
438,510 + CA265_RS01725 0.64 -0.1
438,677 + CA265_RS01725 0.83 -2.2
438,841 - -1.7
438,843 - -2.1
438,849 - -1.3
438,869 + +0.0
438,911 + -2.0

Or see this region's nucleotide sequence