Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00745

Experiment: R2A with nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00740 and CA265_RS00745 are separated by 61 nucleotidesCA265_RS00745 and CA265_RS00750 are separated by 346 nucleotides CA265_RS00740: CA265_RS00740 - hypothetical protein, at 177,889 to 180,009 _RS00740 CA265_RS00745: CA265_RS00745 - glucuronyl hydrolase, at 180,071 to 181,261 _RS00745 CA265_RS00750: CA265_RS00750 - hypothetical protein, at 181,608 to 182,831 _RS00750 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 179.101 kb on + strand, within CA265_RS00740at 179.101 kb on + strand, within CA265_RS00740at 179.154 kb on + strand, within CA265_RS00740at 179.155 kb on - strand, within CA265_RS00740at 179.155 kb on - strand, within CA265_RS00740at 179.276 kb on - strand, within CA265_RS00740at 179.276 kb on - strand, within CA265_RS00740at 179.325 kb on - strand, within CA265_RS00740at 179.434 kb on - strand, within CA265_RS00740at 179.466 kb on + strand, within CA265_RS00740at 179.470 kb on - strand, within CA265_RS00740at 179.478 kb on + strand, within CA265_RS00740at 179.479 kb on - strand, within CA265_RS00740at 179.479 kb on - strand, within CA265_RS00740at 179.479 kb on - strand, within CA265_RS00740at 179.479 kb on - strand, within CA265_RS00740at 179.480 kb on + strand, within CA265_RS00740at 179.502 kb on - strand, within CA265_RS00740at 179.509 kb on - strand, within CA265_RS00740at 179.537 kb on - strand, within CA265_RS00740at 179.577 kb on + strand, within CA265_RS00740at 179.578 kb on - strand, within CA265_RS00740at 179.587 kb on - strand, within CA265_RS00740at 179.677 kb on + strand, within CA265_RS00740at 179.677 kb on + strand, within CA265_RS00740at 179.678 kb on - strand, within CA265_RS00740at 179.694 kb on - strand, within CA265_RS00740at 179.694 kb on - strand, within CA265_RS00740at 179.736 kb on + strand, within CA265_RS00740at 179.739 kb on - strand, within CA265_RS00740at 179.748 kb on + strand, within CA265_RS00740at 179.798 kb on + strandat 179.799 kb on - strandat 179.851 kb on - strandat 179.892 kb on + strandat 179.892 kb on + strandat 179.893 kb on - strandat 179.896 kb on - strandat 179.900 kb on + strandat 179.901 kb on - strandat 179.906 kb on + strandat 179.953 kb on - strandat 179.953 kb on - strandat 179.983 kb on - strandat 180.008 kb on - strandat 180.027 kb on + strandat 180.071 kb on - strandat 180.072 kb on + strandat 180.073 kb on - strandat 180.093 kb on + strandat 180.115 kb on + strandat 180.181 kb on + strandat 180.203 kb on - strand, within CA265_RS00745at 180.281 kb on - strand, within CA265_RS00745at 180.324 kb on + strand, within CA265_RS00745at 180.324 kb on + strand, within CA265_RS00745at 180.325 kb on - strand, within CA265_RS00745at 180.435 kb on - strand, within CA265_RS00745at 180.435 kb on - strand, within CA265_RS00745at 180.435 kb on - strand, within CA265_RS00745at 180.455 kb on + strand, within CA265_RS00745at 180.456 kb on - strand, within CA265_RS00745at 180.480 kb on - strand, within CA265_RS00745at 180.590 kb on - strand, within CA265_RS00745at 180.590 kb on - strand, within CA265_RS00745at 180.595 kb on + strand, within CA265_RS00745at 180.670 kb on + strand, within CA265_RS00745at 180.722 kb on + strand, within CA265_RS00745at 180.732 kb on + strand, within CA265_RS00745at 180.737 kb on + strand, within CA265_RS00745at 180.738 kb on - strand, within CA265_RS00745at 180.830 kb on + strand, within CA265_RS00745at 180.830 kb on + strand, within CA265_RS00745at 180.830 kb on + strand, within CA265_RS00745at 180.831 kb on - strand, within CA265_RS00745at 180.831 kb on - strand, within CA265_RS00745at 180.836 kb on + strand, within CA265_RS00745at 180.836 kb on + strand, within CA265_RS00745at 180.837 kb on - strand, within CA265_RS00745at 180.837 kb on - strand, within CA265_RS00745at 180.839 kb on - strand, within CA265_RS00745at 180.904 kb on + strand, within CA265_RS00745at 180.907 kb on - strand, within CA265_RS00745at 180.910 kb on - strand, within CA265_RS00745at 180.940 kb on - strand, within CA265_RS00745at 181.024 kb on - strand, within CA265_RS00745at 181.037 kb on + strand, within CA265_RS00745at 181.038 kb on - strand, within CA265_RS00745at 181.092 kb on - strand, within CA265_RS00745at 181.112 kb on + strand, within CA265_RS00745at 181.112 kb on + strand, within CA265_RS00745at 181.113 kb on - strand, within CA265_RS00745at 181.146 kb on + strandat 181.157 kb on - strandat 181.157 kb on - strandat 181.259 kb on + strandat 181.260 kb on - strandat 181.462 kb on + strandat 181.507 kb on + strandat 181.508 kb on - strandat 181.807 kb on + strand, within CA265_RS00750at 181.905 kb on - strand, within CA265_RS00750at 182.007 kb on - strand, within CA265_RS00750at 182.007 kb on - strand, within CA265_RS00750at 182.098 kb on + strand, within CA265_RS00750at 182.117 kb on - strand, within CA265_RS00750at 182.121 kb on - strand, within CA265_RS00750at 182.136 kb on + strand, within CA265_RS00750at 182.252 kb on - strand, within CA265_RS00750

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 6 mM
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179,101 + CA265_RS00740 0.57 -0.2
179,101 + CA265_RS00740 0.57 -0.6
179,154 + CA265_RS00740 0.60 -1.6
179,155 - CA265_RS00740 0.60 +2.2
179,155 - CA265_RS00740 0.60 -0.3
179,276 - CA265_RS00740 0.65 +0.2
179,276 - CA265_RS00740 0.65 -1.9
179,325 - CA265_RS00740 0.68 +0.1
179,434 - CA265_RS00740 0.73 -1.6
179,466 + CA265_RS00740 0.74 -2.0
179,470 - CA265_RS00740 0.75 +0.1
179,478 + CA265_RS00740 0.75 -1.5
179,479 - CA265_RS00740 0.75 +1.8
179,479 - CA265_RS00740 0.75 -2.9
179,479 - CA265_RS00740 0.75 -0.4
179,479 - CA265_RS00740 0.75 +0.2
179,480 + CA265_RS00740 0.75 +1.2
179,502 - CA265_RS00740 0.76 -0.5
179,509 - CA265_RS00740 0.76 +0.8
179,537 - CA265_RS00740 0.78 -0.3
179,577 + CA265_RS00740 0.80 -2.5
179,578 - CA265_RS00740 0.80 -1.1
179,587 - CA265_RS00740 0.80 -1.9
179,677 + CA265_RS00740 0.84 +0.7
179,677 + CA265_RS00740 0.84 -3.0
179,678 - CA265_RS00740 0.84 -1.1
179,694 - CA265_RS00740 0.85 -0.3
179,694 - CA265_RS00740 0.85 -0.8
179,736 + CA265_RS00740 0.87 -3.7
179,739 - CA265_RS00740 0.87 +1.8
179,748 + CA265_RS00740 0.88 +0.6
179,798 + +1.0
179,799 - +0.1
179,851 - +0.8
179,892 + -0.3
179,892 + -2.0
179,893 - +0.1
179,896 - +0.6
179,900 + -0.8
179,901 - -0.6
179,906 + +0.6
179,953 - +2.3
179,953 - -0.2
179,983 - -2.2
180,008 - -3.0
180,027 + +1.9
180,071 - -1.9
180,072 + -1.6
180,073 - +0.3
180,093 + +0.3
180,115 + -2.8
180,181 + +0.3
180,203 - CA265_RS00745 0.11 -0.9
180,281 - CA265_RS00745 0.18 +0.8
180,324 + CA265_RS00745 0.21 -1.8
180,324 + CA265_RS00745 0.21 -0.9
180,325 - CA265_RS00745 0.21 +0.8
180,435 - CA265_RS00745 0.31 +0.6
180,435 - CA265_RS00745 0.31 -0.6
180,435 - CA265_RS00745 0.31 -1.1
180,455 + CA265_RS00745 0.32 -1.8
180,456 - CA265_RS00745 0.32 -0.4
180,480 - CA265_RS00745 0.34 +0.1
180,590 - CA265_RS00745 0.44 +0.1
180,590 - CA265_RS00745 0.44 -0.5
180,595 + CA265_RS00745 0.44 +2.9
180,670 + CA265_RS00745 0.50 +0.0
180,722 + CA265_RS00745 0.55 -0.8
180,732 + CA265_RS00745 0.55 +0.5
180,737 + CA265_RS00745 0.56 -0.4
180,738 - CA265_RS00745 0.56 -0.6
180,830 + CA265_RS00745 0.64 +0.8
180,830 + CA265_RS00745 0.64 +0.6
180,830 + CA265_RS00745 0.64 +0.7
180,831 - CA265_RS00745 0.64 -0.1
180,831 - CA265_RS00745 0.64 -1.6
180,836 + CA265_RS00745 0.64 -0.7
180,836 + CA265_RS00745 0.64 -2.3
180,837 - CA265_RS00745 0.64 -0.4
180,837 - CA265_RS00745 0.64 -0.3
180,839 - CA265_RS00745 0.64 -0.6
180,904 + CA265_RS00745 0.70 +0.3
180,907 - CA265_RS00745 0.70 -0.5
180,910 - CA265_RS00745 0.70 -0.6
180,940 - CA265_RS00745 0.73 -2.3
181,024 - CA265_RS00745 0.80 -1.6
181,037 + CA265_RS00745 0.81 -2.6
181,038 - CA265_RS00745 0.81 -2.0
181,092 - CA265_RS00745 0.86 -0.4
181,112 + CA265_RS00745 0.87 +1.4
181,112 + CA265_RS00745 0.87 -1.9
181,113 - CA265_RS00745 0.87 -2.8
181,146 + +0.2
181,157 - -0.7
181,157 - -0.1
181,259 + -3.2
181,260 - -0.6
181,462 + +0.5
181,507 + -2.3
181,508 - +0.9
181,807 + CA265_RS00750 0.16 +1.0
181,905 - CA265_RS00750 0.24 +1.4
182,007 - CA265_RS00750 0.33 -0.7
182,007 - CA265_RS00750 0.33 +0.9
182,098 + CA265_RS00750 0.40 -1.4
182,117 - CA265_RS00750 0.42 -1.0
182,121 - CA265_RS00750 0.42 +1.7
182,136 + CA265_RS00750 0.43 +1.7
182,252 - CA265_RS00750 0.53 +0.4

Or see this region's nucleotide sequence