Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29035

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29025 and BPHYT_RS29030 are separated by 377 nucleotidesBPHYT_RS29030 and BPHYT_RS29035 are separated by 69 nucleotidesBPHYT_RS29035 and BPHYT_RS29040 are separated by 133 nucleotides BPHYT_RS29025: BPHYT_RS29025 - hypothetical protein, at 2,069,247 to 2,069,582 _RS29025 BPHYT_RS29030: BPHYT_RS29030 - hypothetical protein, at 2,069,960 to 2,070,205 _RS29030 BPHYT_RS29035: BPHYT_RS29035 - arsenic transporter, at 2,070,275 to 2,071,525 _RS29035 BPHYT_RS29040: BPHYT_RS29040 - diguanylate cyclase, at 2,071,659 to 2,072,684 _RS29040 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -1 0 1at 2069.404 kb on - strand, within BPHYT_RS29025at 2069.642 kb on + strandat 2069.642 kb on + strandat 2069.695 kb on - strandat 2069.753 kb on - strandat 2069.967 kb on - strandat 2070.214 kb on + strandat 2070.225 kb on + strandat 2070.913 kb on + strand, within BPHYT_RS29035at 2071.222 kb on - strand, within BPHYT_RS29035at 2072.021 kb on - strand, within BPHYT_RS29040at 2072.312 kb on - strand, within BPHYT_RS29040at 2072.338 kb on + strand, within BPHYT_RS29040

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,069,404 - BPHYT_RS29025 0.47 +0.2
2,069,642 + -0.3
2,069,642 + -0.3
2,069,695 - +0.1
2,069,753 - -0.8
2,069,967 - +0.1
2,070,214 + +0.9
2,070,225 + -0.1
2,070,913 + BPHYT_RS29035 0.51 +0.2
2,071,222 - BPHYT_RS29035 0.76 -0.8
2,072,021 - BPHYT_RS29040 0.35 -0.4
2,072,312 - BPHYT_RS29040 0.64 -0.8
2,072,338 + BPHYT_RS29040 0.66 -0.1

Or see this region's nucleotide sequence