Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30140

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30130 and AO356_30135 are separated by 18 nucleotidesAO356_30135 and AO356_30140 are separated by 36 nucleotidesAO356_30140 and AO356_30145 are separated by 162 nucleotides AO356_30130: AO356_30130 - pyridine nucleotide-disulfide oxidoreductase, at 7,032,144 to 7,033,376 _30130 AO356_30135: AO356_30135 - Rieske family ferredoxin, at 7,033,395 to 7,033,715 _30135 AO356_30140: AO356_30140 - fatty acid desaturase, at 7,033,752 to 7,034,840 _30140 AO356_30145: AO356_30145 - LacI family transcriptional regulator, at 7,035,003 to 7,036,052 _30145 Position (kb) 7033 7034 7035Strain fitness (log2 ratio) -2 -1 0 1 2at 7032.757 kb on - strand, within AO356_30130at 7032.828 kb on + strand, within AO356_30130at 7032.828 kb on + strand, within AO356_30130at 7032.997 kb on + strand, within AO356_30130at 7032.998 kb on - strand, within AO356_30130at 7033.065 kb on + strand, within AO356_30130at 7033.066 kb on - strand, within AO356_30130at 7033.066 kb on - strand, within AO356_30130at 7033.299 kb on - strandat 7033.301 kb on - strandat 7033.444 kb on + strand, within AO356_30135at 7033.444 kb on + strand, within AO356_30135at 7033.577 kb on + strand, within AO356_30135at 7033.630 kb on + strand, within AO356_30135at 7033.630 kb on + strand, within AO356_30135at 7033.630 kb on + strand, within AO356_30135at 7033.630 kb on + strand, within AO356_30135at 7033.630 kb on + strand, within AO356_30135at 7033.630 kb on + strand, within AO356_30135at 7033.631 kb on - strand, within AO356_30135at 7033.631 kb on - strand, within AO356_30135at 7033.631 kb on - strand, within AO356_30135at 7033.631 kb on - strand, within AO356_30135at 7033.634 kb on + strand, within AO356_30135at 7033.634 kb on + strand, within AO356_30135at 7033.634 kb on + strand, within AO356_30135at 7033.635 kb on - strand, within AO356_30135at 7033.675 kb on - strand, within AO356_30135at 7033.692 kb on + strandat 7033.692 kb on + strandat 7033.692 kb on + strandat 7033.693 kb on - strandat 7033.828 kb on + strandat 7033.828 kb on + strandat 7033.898 kb on - strand, within AO356_30140at 7033.951 kb on + strand, within AO356_30140at 7034.003 kb on - strand, within AO356_30140at 7034.003 kb on - strand, within AO356_30140at 7034.027 kb on + strand, within AO356_30140at 7034.028 kb on - strand, within AO356_30140at 7034.029 kb on + strand, within AO356_30140at 7034.029 kb on + strand, within AO356_30140at 7034.029 kb on + strand, within AO356_30140at 7034.029 kb on + strand, within AO356_30140at 7034.029 kb on + strand, within AO356_30140at 7034.029 kb on + strand, within AO356_30140at 7034.030 kb on - strand, within AO356_30140at 7034.030 kb on - strand, within AO356_30140at 7034.030 kb on - strand, within AO356_30140at 7034.030 kb on - strand, within AO356_30140at 7034.030 kb on - strand, within AO356_30140at 7034.030 kb on - strand, within AO356_30140at 7034.049 kb on - strand, within AO356_30140at 7034.049 kb on - strand, within AO356_30140at 7034.079 kb on + strand, within AO356_30140at 7034.079 kb on + strand, within AO356_30140at 7034.079 kb on + strand, within AO356_30140at 7034.080 kb on - strand, within AO356_30140at 7034.080 kb on - strand, within AO356_30140at 7034.080 kb on - strand, within AO356_30140at 7034.104 kb on + strand, within AO356_30140at 7034.105 kb on - strand, within AO356_30140at 7034.122 kb on + strand, within AO356_30140at 7034.143 kb on + strand, within AO356_30140at 7034.143 kb on + strand, within AO356_30140at 7034.143 kb on + strand, within AO356_30140at 7034.143 kb on + strand, within AO356_30140at 7034.143 kb on + strand, within AO356_30140at 7034.143 kb on + strand, within AO356_30140at 7034.144 kb on - strand, within AO356_30140at 7034.197 kb on + strand, within AO356_30140at 7034.301 kb on + strand, within AO356_30140at 7034.302 kb on - strand, within AO356_30140at 7034.569 kb on + strand, within AO356_30140at 7034.581 kb on + strand, within AO356_30140at 7034.582 kb on - strand, within AO356_30140at 7034.717 kb on + strand, within AO356_30140at 7034.718 kb on - strand, within AO356_30140at 7034.817 kb on - strandat 7034.892 kb on - strandat 7034.893 kb on + strandat 7034.927 kb on + strandat 7034.927 kb on + strandat 7034.927 kb on + strandat 7034.927 kb on + strandat 7034.927 kb on + strandat 7034.928 kb on - strandat 7034.928 kb on - strandat 7034.938 kb on - strandat 7034.944 kb on + strandat 7034.944 kb on + strandat 7034.944 kb on + strandat 7034.944 kb on + strandat 7034.945 kb on - strandat 7034.945 kb on - strandat 7034.945 kb on - strandat 7034.945 kb on - strandat 7034.945 kb on - strandat 7034.970 kb on + strandat 7035.008 kb on + strandat 7035.009 kb on - strandat 7035.014 kb on + strandat 7035.015 kb on - strandat 7035.015 kb on - strandat 7035.055 kb on + strandat 7035.055 kb on + strandat 7035.056 kb on - strandat 7035.056 kb on - strandat 7035.101 kb on + strandat 7035.150 kb on + strand, within AO356_30145at 7035.180 kb on - strand, within AO356_30145at 7035.180 kb on - strand, within AO356_30145at 7035.180 kb on - strand, within AO356_30145at 7035.243 kb on + strand, within AO356_30145at 7035.651 kb on + strand, within AO356_30145at 7035.773 kb on - strand, within AO356_30145at 7035.781 kb on + strand, within AO356_30145at 7035.804 kb on - strand, within AO356_30145

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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7,032,757 - AO356_30130 0.50 +0.5
7,032,828 + AO356_30130 0.55 +0.0
7,032,828 + AO356_30130 0.55 -0.4
7,032,997 + AO356_30130 0.69 +0.0
7,032,998 - AO356_30130 0.69 -0.6
7,033,065 + AO356_30130 0.75 -0.1
7,033,066 - AO356_30130 0.75 +1.1
7,033,066 - AO356_30130 0.75 -0.7
7,033,299 - +2.1
7,033,301 - +0.1
7,033,444 + AO356_30135 0.15 +0.2
7,033,444 + AO356_30135 0.15 -0.7
7,033,577 + AO356_30135 0.57 -0.2
7,033,630 + AO356_30135 0.73 -0.5
7,033,630 + AO356_30135 0.73 -0.5
7,033,630 + AO356_30135 0.73 -0.7
7,033,630 + AO356_30135 0.73 -0.6
7,033,630 + AO356_30135 0.73 -1.9
7,033,630 + AO356_30135 0.73 -0.1
7,033,631 - AO356_30135 0.74 +0.0
7,033,631 - AO356_30135 0.74 -0.1
7,033,631 - AO356_30135 0.74 +1.7
7,033,631 - AO356_30135 0.74 -0.1
7,033,634 + AO356_30135 0.74 -0.2
7,033,634 + AO356_30135 0.74 +0.2
7,033,634 + AO356_30135 0.74 -0.5
7,033,635 - AO356_30135 0.75 +0.6
7,033,675 - AO356_30135 0.87 -0.0
7,033,692 + +1.1
7,033,692 + +0.0
7,033,692 + -0.7
7,033,693 - -0.9
7,033,828 + -0.3
7,033,828 + -0.7
7,033,898 - AO356_30140 0.13 +0.6
7,033,951 + AO356_30140 0.18 +0.1
7,034,003 - AO356_30140 0.23 -0.4
7,034,003 - AO356_30140 0.23 -0.8
7,034,027 + AO356_30140 0.25 +1.0
7,034,028 - AO356_30140 0.25 +0.7
7,034,029 + AO356_30140 0.25 -0.6
7,034,029 + AO356_30140 0.25 +0.8
7,034,029 + AO356_30140 0.25 +0.6
7,034,029 + AO356_30140 0.25 -0.8
7,034,029 + AO356_30140 0.25 -0.2
7,034,029 + AO356_30140 0.25 -0.2
7,034,030 - AO356_30140 0.26 -0.1
7,034,030 - AO356_30140 0.26 +0.1
7,034,030 - AO356_30140 0.26 -1.8
7,034,030 - AO356_30140 0.26 +0.3
7,034,030 - AO356_30140 0.26 -0.2
7,034,030 - AO356_30140 0.26 -1.7
7,034,049 - AO356_30140 0.27 +0.8
7,034,049 - AO356_30140 0.27 +0.4
7,034,079 + AO356_30140 0.30 -0.1
7,034,079 + AO356_30140 0.30 -1.5
7,034,079 + AO356_30140 0.30 -0.2
7,034,080 - AO356_30140 0.30 +0.3
7,034,080 - AO356_30140 0.30 +0.6
7,034,080 - AO356_30140 0.30 -0.2
7,034,104 + AO356_30140 0.32 -0.1
7,034,105 - AO356_30140 0.32 -0.0
7,034,122 + AO356_30140 0.34 -1.5
7,034,143 + AO356_30140 0.36 +1.3
7,034,143 + AO356_30140 0.36 +1.3
7,034,143 + AO356_30140 0.36 +0.3
7,034,143 + AO356_30140 0.36 +0.4
7,034,143 + AO356_30140 0.36 +0.5
7,034,143 + AO356_30140 0.36 +0.2
7,034,144 - AO356_30140 0.36 -1.0
7,034,197 + AO356_30140 0.41 +0.0
7,034,301 + AO356_30140 0.50 -0.4
7,034,302 - AO356_30140 0.51 +0.6
7,034,569 + AO356_30140 0.75 +0.0
7,034,581 + AO356_30140 0.76 +1.1
7,034,582 - AO356_30140 0.76 -0.1
7,034,717 + AO356_30140 0.89 +0.7
7,034,718 - AO356_30140 0.89 +0.0
7,034,817 - +0.1
7,034,892 - +0.7
7,034,893 + -1.0
7,034,927 + -0.0
7,034,927 + -0.2
7,034,927 + +0.5
7,034,927 + -1.6
7,034,927 + -1.0
7,034,928 - +0.1
7,034,928 - -0.0
7,034,938 - -2.1
7,034,944 + +0.8
7,034,944 + +0.9
7,034,944 + -0.1
7,034,944 + -1.9
7,034,945 - +0.9
7,034,945 - -1.7
7,034,945 - +1.6
7,034,945 - -0.2
7,034,945 - -0.1
7,034,970 + -0.3
7,035,008 + +0.5
7,035,009 - +1.1
7,035,014 + +0.4
7,035,015 - +0.9
7,035,015 - -0.8
7,035,055 + +0.6
7,035,055 + +0.8
7,035,056 - -0.1
7,035,056 - +0.5
7,035,101 + +0.1
7,035,150 + AO356_30145 0.14 -0.9
7,035,180 - AO356_30145 0.17 -0.4
7,035,180 - AO356_30145 0.17 +0.9
7,035,180 - AO356_30145 0.17 -0.5
7,035,243 + AO356_30145 0.23 -0.4
7,035,651 + AO356_30145 0.62 -0.2
7,035,773 - AO356_30145 0.73 -0.5
7,035,781 + AO356_30145 0.74 -1.0
7,035,804 - AO356_30145 0.76 -1.0

Or see this region's nucleotide sequence