Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28785

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28780 and AO356_28785 are separated by 608 nucleotidesAO356_28785 and AO356_28790 are separated by 14 nucleotides AO356_28780: AO356_28780 - host specificity protein, at 6,691,913 to 6,692,803 _28780 AO356_28785: AO356_28785 - decarboxylase, at 6,693,412 to 6,694,806 _28785 AO356_28790: AO356_28790 - cysteine synthase, at 6,694,821 to 6,695,864 _28790 Position (kb) 6693 6694 6695Strain fitness (log2 ratio) -2 -1 0 1at 6692.587 kb on - strand, within AO356_28780at 6692.757 kb on + strandat 6692.757 kb on + strandat 6692.852 kb on - strandat 6692.852 kb on - strandat 6692.852 kb on - strandat 6692.852 kb on - strandat 6692.927 kb on - strandat 6692.932 kb on - strandat 6692.932 kb on - strandat 6692.982 kb on - strandat 6693.231 kb on + strandat 6693.250 kb on + strandat 6693.255 kb on - strandat 6693.312 kb on - strandat 6693.411 kb on + strandat 6693.411 kb on + strandat 6693.412 kb on - strandat 6693.532 kb on - strandat 6693.589 kb on - strand, within AO356_28785at 6693.653 kb on - strand, within AO356_28785at 6693.653 kb on - strand, within AO356_28785at 6693.653 kb on - strand, within AO356_28785at 6693.722 kb on + strand, within AO356_28785at 6693.722 kb on + strand, within AO356_28785at 6693.723 kb on - strand, within AO356_28785at 6693.723 kb on - strand, within AO356_28785at 6693.911 kb on + strand, within AO356_28785at 6694.173 kb on + strand, within AO356_28785at 6694.174 kb on - strand, within AO356_28785at 6694.174 kb on - strand, within AO356_28785at 6694.180 kb on + strand, within AO356_28785at 6694.180 kb on + strand, within AO356_28785at 6694.181 kb on - strand, within AO356_28785at 6694.199 kb on - strand, within AO356_28785at 6694.225 kb on - strand, within AO356_28785at 6694.238 kb on - strand, within AO356_28785at 6694.238 kb on - strand, within AO356_28785at 6694.240 kb on + strand, within AO356_28785at 6694.241 kb on - strand, within AO356_28785at 6694.241 kb on - strand, within AO356_28785at 6694.241 kb on - strand, within AO356_28785at 6694.267 kb on + strand, within AO356_28785at 6694.491 kb on + strand, within AO356_28785at 6694.588 kb on + strand, within AO356_28785at 6694.674 kb on - strandat 6694.770 kb on + strandat 6694.825 kb on + strandat 6694.826 kb on - strandat 6694.829 kb on + strandat 6694.830 kb on - strandat 6694.830 kb on - strandat 6694.830 kb on - strandat 6694.856 kb on + strandat 6694.878 kb on - strandat 6694.880 kb on - strandat 6694.967 kb on - strand, within AO356_28790at 6695.286 kb on + strand, within AO356_28790at 6695.340 kb on + strand, within AO356_28790at 6695.341 kb on - strand, within AO356_28790at 6695.341 kb on - strand, within AO356_28790at 6695.530 kb on - strand, within AO356_28790at 6695.530 kb on - strand, within AO356_28790at 6695.589 kb on + strand, within AO356_28790at 6695.721 kb on + strand, within AO356_28790at 6695.722 kb on - strand, within AO356_28790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,692,587 - AO356_28780 0.76 -0.2
6,692,757 + -0.6
6,692,757 + +0.7
6,692,852 - -0.4
6,692,852 - -0.4
6,692,852 - +0.0
6,692,852 - +0.7
6,692,927 - +0.1
6,692,932 - -0.2
6,692,932 - +0.1
6,692,982 - -0.2
6,693,231 + -0.1
6,693,250 + -0.5
6,693,255 - -1.4
6,693,312 - +0.3
6,693,411 + -0.3
6,693,411 + +0.5
6,693,412 - +1.1
6,693,532 - +0.1
6,693,589 - AO356_28785 0.13 +0.7
6,693,653 - AO356_28785 0.17 +0.0
6,693,653 - AO356_28785 0.17 +0.0
6,693,653 - AO356_28785 0.17 +0.2
6,693,722 + AO356_28785 0.22 -1.1
6,693,722 + AO356_28785 0.22 +0.4
6,693,723 - AO356_28785 0.22 +0.7
6,693,723 - AO356_28785 0.22 -1.1
6,693,911 + AO356_28785 0.36 -0.1
6,694,173 + AO356_28785 0.55 -0.2
6,694,174 - AO356_28785 0.55 +1.1
6,694,174 - AO356_28785 0.55 -0.8
6,694,180 + AO356_28785 0.55 -1.7
6,694,180 + AO356_28785 0.55 +0.3
6,694,181 - AO356_28785 0.55 +0.4
6,694,199 - AO356_28785 0.56 -0.2
6,694,225 - AO356_28785 0.58 +0.4
6,694,238 - AO356_28785 0.59 -0.1
6,694,238 - AO356_28785 0.59 +0.3
6,694,240 + AO356_28785 0.59 -0.8
6,694,241 - AO356_28785 0.59 +1.0
6,694,241 - AO356_28785 0.59 -0.9
6,694,241 - AO356_28785 0.59 -0.3
6,694,267 + AO356_28785 0.61 -1.0
6,694,491 + AO356_28785 0.77 +0.6
6,694,588 + AO356_28785 0.84 +0.6
6,694,674 - -0.3
6,694,770 + +0.0
6,694,825 + +0.8
6,694,826 - +0.4
6,694,829 + +0.5
6,694,830 - -2.4
6,694,830 - -0.3
6,694,830 - +1.4
6,694,856 + +0.6
6,694,878 - +0.5
6,694,880 - +0.0
6,694,967 - AO356_28790 0.14 -0.1
6,695,286 + AO356_28790 0.45 -0.3
6,695,340 + AO356_28790 0.50 -0.1
6,695,341 - AO356_28790 0.50 +0.3
6,695,341 - AO356_28790 0.50 +0.1
6,695,530 - AO356_28790 0.68 -0.1
6,695,530 - AO356_28790 0.68 -0.6
6,695,589 + AO356_28790 0.74 -0.4
6,695,721 + AO356_28790 0.86 -0.8
6,695,722 - AO356_28790 0.86 +0.8

Or see this region's nucleotide sequence