Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28780 and AO356_28785 are separated by 608 nucleotides AO356_28785 and AO356_28790 are separated by 14 nucleotides
AO356_28780: AO356_28780 - host specificity protein, at 6,691,913 to 6,692,803
_28780
AO356_28785: AO356_28785 - decarboxylase, at 6,693,412 to 6,694,806
_28785
AO356_28790: AO356_28790 - cysteine synthase, at 6,694,821 to 6,695,864
_28790
Position (kb)
6693
6694
6695 Strain fitness (log2 ratio)
-2
-1
0
1 at 6692.587 kb on - strand, within AO356_28780 at 6692.757 kb on + strand at 6692.757 kb on + strand at 6692.852 kb on - strand at 6692.852 kb on - strand at 6692.852 kb on - strand at 6692.852 kb on - strand at 6692.927 kb on - strand at 6692.932 kb on - strand at 6692.932 kb on - strand at 6692.982 kb on - strand at 6693.231 kb on + strand at 6693.250 kb on + strand at 6693.255 kb on - strand at 6693.312 kb on - strand at 6693.411 kb on + strand at 6693.411 kb on + strand at 6693.412 kb on - strand at 6693.532 kb on - strand at 6693.589 kb on - strand, within AO356_28785 at 6693.653 kb on - strand, within AO356_28785 at 6693.653 kb on - strand, within AO356_28785 at 6693.653 kb on - strand, within AO356_28785 at 6693.722 kb on + strand, within AO356_28785 at 6693.722 kb on + strand, within AO356_28785 at 6693.723 kb on - strand, within AO356_28785 at 6693.723 kb on - strand, within AO356_28785 at 6693.911 kb on + strand, within AO356_28785 at 6694.173 kb on + strand, within AO356_28785 at 6694.174 kb on - strand, within AO356_28785 at 6694.174 kb on - strand, within AO356_28785 at 6694.180 kb on + strand, within AO356_28785 at 6694.180 kb on + strand, within AO356_28785 at 6694.181 kb on - strand, within AO356_28785 at 6694.199 kb on - strand, within AO356_28785 at 6694.225 kb on - strand, within AO356_28785 at 6694.238 kb on - strand, within AO356_28785 at 6694.238 kb on - strand, within AO356_28785 at 6694.240 kb on + strand, within AO356_28785 at 6694.241 kb on - strand, within AO356_28785 at 6694.241 kb on - strand, within AO356_28785 at 6694.241 kb on - strand, within AO356_28785 at 6694.267 kb on + strand, within AO356_28785 at 6694.491 kb on + strand, within AO356_28785 at 6694.588 kb on + strand, within AO356_28785 at 6694.674 kb on - strand at 6694.770 kb on + strand at 6694.825 kb on + strand at 6694.826 kb on - strand at 6694.829 kb on + strand at 6694.830 kb on - strand at 6694.830 kb on - strand at 6694.830 kb on - strand at 6694.856 kb on + strand at 6694.878 kb on - strand at 6694.880 kb on - strand at 6694.967 kb on - strand, within AO356_28790 at 6695.286 kb on + strand, within AO356_28790 at 6695.340 kb on + strand, within AO356_28790 at 6695.341 kb on - strand, within AO356_28790 at 6695.341 kb on - strand, within AO356_28790 at 6695.530 kb on - strand, within AO356_28790 at 6695.530 kb on - strand, within AO356_28790 at 6695.589 kb on + strand, within AO356_28790 at 6695.721 kb on + strand, within AO356_28790 at 6695.722 kb on - strand, within AO356_28790
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 6,692,587 - AO356_28780 0.76 -0.2 6,692,757 + -0.6 6,692,757 + +0.7 6,692,852 - -0.4 6,692,852 - -0.4 6,692,852 - +0.0 6,692,852 - +0.7 6,692,927 - +0.1 6,692,932 - -0.2 6,692,932 - +0.1 6,692,982 - -0.2 6,693,231 + -0.1 6,693,250 + -0.5 6,693,255 - -1.4 6,693,312 - +0.3 6,693,411 + -0.3 6,693,411 + +0.5 6,693,412 - +1.1 6,693,532 - +0.1 6,693,589 - AO356_28785 0.13 +0.7 6,693,653 - AO356_28785 0.17 +0.0 6,693,653 - AO356_28785 0.17 +0.0 6,693,653 - AO356_28785 0.17 +0.2 6,693,722 + AO356_28785 0.22 -1.1 6,693,722 + AO356_28785 0.22 +0.4 6,693,723 - AO356_28785 0.22 +0.7 6,693,723 - AO356_28785 0.22 -1.1 6,693,911 + AO356_28785 0.36 -0.1 6,694,173 + AO356_28785 0.55 -0.2 6,694,174 - AO356_28785 0.55 +1.1 6,694,174 - AO356_28785 0.55 -0.8 6,694,180 + AO356_28785 0.55 -1.7 6,694,180 + AO356_28785 0.55 +0.3 6,694,181 - AO356_28785 0.55 +0.4 6,694,199 - AO356_28785 0.56 -0.2 6,694,225 - AO356_28785 0.58 +0.4 6,694,238 - AO356_28785 0.59 -0.1 6,694,238 - AO356_28785 0.59 +0.3 6,694,240 + AO356_28785 0.59 -0.8 6,694,241 - AO356_28785 0.59 +1.0 6,694,241 - AO356_28785 0.59 -0.9 6,694,241 - AO356_28785 0.59 -0.3 6,694,267 + AO356_28785 0.61 -1.0 6,694,491 + AO356_28785 0.77 +0.6 6,694,588 + AO356_28785 0.84 +0.6 6,694,674 - -0.3 6,694,770 + +0.0 6,694,825 + +0.8 6,694,826 - +0.4 6,694,829 + +0.5 6,694,830 - -2.4 6,694,830 - -0.3 6,694,830 - +1.4 6,694,856 + +0.6 6,694,878 - +0.5 6,694,880 - +0.0 6,694,967 - AO356_28790 0.14 -0.1 6,695,286 + AO356_28790 0.45 -0.3 6,695,340 + AO356_28790 0.50 -0.1 6,695,341 - AO356_28790 0.50 +0.3 6,695,341 - AO356_28790 0.50 +0.1 6,695,530 - AO356_28790 0.68 -0.1 6,695,530 - AO356_28790 0.68 -0.6 6,695,589 + AO356_28790 0.74 -0.4 6,695,721 + AO356_28790 0.86 -0.8 6,695,722 - AO356_28790 0.86 +0.8
Or see this region's nucleotide sequence