Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03795

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03785 and AO356_03790 are separated by 9 nucleotidesAO356_03790 and AO356_03795 are separated by 231 nucleotidesAO356_03795 and AO356_03800 are separated by 88 nucleotidesAO356_03800 and AO356_03805 are separated by 31 nucleotides AO356_03785: AO356_03785 - flagellar motor switch protein FliM, at 838,998 to 839,966 _03785 AO356_03790: AO356_03790 - flagellar basal body protein FliL, at 839,976 to 840,479 _03790 AO356_03795: AO356_03795 - flagellar hook-length control protein, at 840,711 to 842,084 _03795 AO356_03800: AO356_03800 - histidine kinase, at 842,173 to 842,517 _03800 AO356_03805: AO356_03805 - chemotaxis protein CheY, at 842,549 to 844,255 _03805 Position (kb) 840 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2at 839.776 kb on + strand, within AO356_03785at 839.776 kb on + strand, within AO356_03785at 839.854 kb on + strand, within AO356_03785at 839.854 kb on + strand, within AO356_03785at 839.855 kb on - strand, within AO356_03785at 839.895 kb on + strandat 839.895 kb on + strandat 839.895 kb on + strandat 839.896 kb on - strandat 839.993 kb on + strandat 839.993 kb on + strandat 839.994 kb on - strandat 839.994 kb on - strandat 840.144 kb on - strand, within AO356_03790at 840.144 kb on - strand, within AO356_03790at 840.209 kb on + strand, within AO356_03790at 840.209 kb on + strand, within AO356_03790at 840.209 kb on + strand, within AO356_03790at 840.209 kb on + strand, within AO356_03790at 840.209 kb on + strand, within AO356_03790at 840.210 kb on - strand, within AO356_03790at 840.210 kb on - strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.226 kb on + strand, within AO356_03790at 840.227 kb on - strand, within AO356_03790at 840.227 kb on - strand, within AO356_03790at 840.227 kb on - strand, within AO356_03790at 840.250 kb on + strand, within AO356_03790at 840.250 kb on + strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.251 kb on - strand, within AO356_03790at 840.358 kb on + strand, within AO356_03790at 840.358 kb on + strand, within AO356_03790at 840.358 kb on + strand, within AO356_03790at 840.359 kb on - strand, within AO356_03790at 840.453 kb on + strandat 840.485 kb on + strandat 840.486 kb on - strandat 840.486 kb on - strandat 840.497 kb on - strandat 840.540 kb on + strandat 840.541 kb on - strandat 840.558 kb on - strandat 840.577 kb on + strandat 840.577 kb on + strandat 840.577 kb on + strandat 840.577 kb on + strandat 840.577 kb on + strandat 840.577 kb on + strandat 840.578 kb on - strandat 840.718 kb on + strandat 840.718 kb on + strandat 840.718 kb on + strandat 840.718 kb on + strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.719 kb on - strandat 840.721 kb on + strandat 840.722 kb on - strandat 840.722 kb on - strandat 840.722 kb on - strandat 840.722 kb on - strandat 840.722 kb on - strandat 840.830 kb on + strandat 840.830 kb on + strandat 840.831 kb on - strandat 840.831 kb on - strandat 840.933 kb on - strand, within AO356_03795at 840.933 kb on - strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.111 kb on + strand, within AO356_03795at 841.112 kb on - strand, within AO356_03795at 841.112 kb on - strand, within AO356_03795at 841.112 kb on - strand, within AO356_03795at 841.112 kb on - strand, within AO356_03795at 841.112 kb on - strand, within AO356_03795at 841.112 kb on - strand, within AO356_03795at 841.163 kb on + strand, within AO356_03795at 841.163 kb on + strand, within AO356_03795at 841.163 kb on + strand, within AO356_03795at 841.164 kb on - strand, within AO356_03795at 841.164 kb on - strand, within AO356_03795at 841.164 kb on - strand, within AO356_03795at 841.988 kb on + strandat 842.085 kb on - strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.112 kb on + strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.113 kb on - strandat 842.116 kb on + strandat 842.116 kb on + strandat 842.116 kb on + strandat 842.117 kb on - strandat 842.128 kb on + strandat 842.128 kb on + strandat 842.129 kb on - strandat 842.129 kb on - strandat 842.437 kb on - strand, within AO356_03800at 842.437 kb on - strand, within AO356_03800at 842.550 kb on + strandat 842.551 kb on - strandat 842.588 kb on - strandat 842.781 kb on + strand, within AO356_03805at 842.782 kb on - strand, within AO356_03805at 842.809 kb on + strand, within AO356_03805at 842.809 kb on + strand, within AO356_03805at 842.810 kb on - strand, within AO356_03805at 842.810 kb on - strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.823 kb on + strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.824 kb on - strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.901 kb on + strand, within AO356_03805at 842.920 kb on + strand, within AO356_03805at 842.920 kb on + strand, within AO356_03805at 842.921 kb on - strand, within AO356_03805at 842.922 kb on + strand, within AO356_03805at 842.922 kb on + strand, within AO356_03805at 842.923 kb on - strand, within AO356_03805at 842.923 kb on - strand, within AO356_03805at 842.980 kb on - strand, within AO356_03805at 843.070 kb on - strand, within AO356_03805at 843.070 kb on - strand, within AO356_03805

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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839,776 + AO356_03785 0.80 +0.9
839,776 + AO356_03785 0.80 +0.6
839,854 + AO356_03785 0.88 +0.5
839,854 + AO356_03785 0.88 +0.7
839,855 - AO356_03785 0.88 +0.3
839,895 + +0.5
839,895 + +0.6
839,895 + +0.2
839,896 - +0.5
839,993 + -0.2
839,993 + +0.5
839,994 - +0.6
839,994 - -0.0
840,144 - AO356_03790 0.33 +0.5
840,144 - AO356_03790 0.33 +1.1
840,209 + AO356_03790 0.46 +0.2
840,209 + AO356_03790 0.46 +0.1
840,209 + AO356_03790 0.46 +0.5
840,209 + AO356_03790 0.46 -2.0
840,209 + AO356_03790 0.46 -0.1
840,210 - AO356_03790 0.46 -0.3
840,210 - AO356_03790 0.46 +0.1
840,226 + AO356_03790 0.50 +1.5
840,226 + AO356_03790 0.50 -0.1
840,226 + AO356_03790 0.50 +0.2
840,226 + AO356_03790 0.50 +0.4
840,226 + AO356_03790 0.50 +0.6
840,226 + AO356_03790 0.50 -0.1
840,226 + AO356_03790 0.50 -0.4
840,226 + AO356_03790 0.50 +0.8
840,227 - AO356_03790 0.50 +0.4
840,227 - AO356_03790 0.50 +0.4
840,227 - AO356_03790 0.50 +0.3
840,250 + AO356_03790 0.54 +0.6
840,250 + AO356_03790 0.54 +0.9
840,251 - AO356_03790 0.55 +1.9
840,251 - AO356_03790 0.55 -0.1
840,251 - AO356_03790 0.55 +0.6
840,251 - AO356_03790 0.55 +0.4
840,251 - AO356_03790 0.55 -0.1
840,251 - AO356_03790 0.55 +0.2
840,251 - AO356_03790 0.55 +0.3
840,358 + AO356_03790 0.76 +0.3
840,358 + AO356_03790 0.76 +0.7
840,358 + AO356_03790 0.76 +0.6
840,359 - AO356_03790 0.76 +0.3
840,453 + +0.6
840,485 + +0.3
840,486 - +0.6
840,486 - +1.2
840,497 - +0.4
840,540 + +0.4
840,541 - -0.7
840,558 - -0.2
840,577 + -0.9
840,577 + +0.2
840,577 + -0.3
840,577 + -0.0
840,577 + +0.6
840,577 + +0.2
840,578 - +0.7
840,718 + +0.5
840,718 + +0.1
840,718 + +0.6
840,718 + -0.6
840,719 - -0.3
840,719 - +0.4
840,719 - +0.4
840,719 - +0.8
840,719 - +1.8
840,719 - +0.7
840,719 - +0.1
840,719 - +0.8
840,719 - +0.8
840,721 + +1.0
840,722 - +0.5
840,722 - +0.5
840,722 - +0.5
840,722 - +1.4
840,722 - +0.7
840,830 + +1.0
840,830 + +0.2
840,831 - -0.1
840,831 - +1.2
840,933 - AO356_03795 0.16 +0.3
840,933 - AO356_03795 0.16 +0.2
841,111 + AO356_03795 0.29 +0.2
841,111 + AO356_03795 0.29 -0.1
841,111 + AO356_03795 0.29 +1.1
841,111 + AO356_03795 0.29 +0.4
841,111 + AO356_03795 0.29 +0.8
841,111 + AO356_03795 0.29 +0.4
841,111 + AO356_03795 0.29 -0.6
841,111 + AO356_03795 0.29 +0.8
841,111 + AO356_03795 0.29 -0.0
841,111 + AO356_03795 0.29 +0.7
841,111 + AO356_03795 0.29 +0.4
841,111 + AO356_03795 0.29 +0.6
841,111 + AO356_03795 0.29 +0.5
841,111 + AO356_03795 0.29 +0.4
841,111 + AO356_03795 0.29 +0.6
841,112 - AO356_03795 0.29 +0.6
841,112 - AO356_03795 0.29 +0.9
841,112 - AO356_03795 0.29 -0.0
841,112 - AO356_03795 0.29 -0.6
841,112 - AO356_03795 0.29 +0.5
841,112 - AO356_03795 0.29 +0.8
841,163 + AO356_03795 0.33 +0.2
841,163 + AO356_03795 0.33 +0.4
841,163 + AO356_03795 0.33 -0.1
841,164 - AO356_03795 0.33 +0.5
841,164 - AO356_03795 0.33 +0.4
841,164 - AO356_03795 0.33 -0.0
841,988 + -0.1
842,085 - -0.6
842,112 + +0.9
842,112 + -0.4
842,112 + -0.3
842,112 + -1.6
842,113 - -0.4
842,113 - +0.5
842,113 - -0.5
842,113 - +0.3
842,116 + -1.7
842,116 + -0.9
842,116 + +0.3
842,117 - -0.1
842,128 + -0.4
842,128 + +0.0
842,129 - -0.5
842,129 - -0.8
842,437 - AO356_03800 0.77 -1.6
842,437 - AO356_03800 0.77 -1.7
842,550 + -1.5
842,551 - +0.5
842,588 - -0.5
842,781 + AO356_03805 0.14 -1.5
842,782 - AO356_03805 0.14 +0.6
842,809 + AO356_03805 0.15 -0.1
842,809 + AO356_03805 0.15 -0.8
842,810 - AO356_03805 0.15 -1.0
842,810 - AO356_03805 0.15 +0.9
842,823 + AO356_03805 0.16 +1.3
842,823 + AO356_03805 0.16 -0.6
842,823 + AO356_03805 0.16 -0.3
842,823 + AO356_03805 0.16 -1.4
842,824 - AO356_03805 0.16 +0.7
842,824 - AO356_03805 0.16 +0.7
842,824 - AO356_03805 0.16 -0.2
842,824 - AO356_03805 0.16 +0.0
842,901 + AO356_03805 0.21 -0.6
842,901 + AO356_03805 0.21 +0.0
842,901 + AO356_03805 0.21 -0.9
842,901 + AO356_03805 0.21 -0.7
842,920 + AO356_03805 0.22 +0.1
842,920 + AO356_03805 0.22 +0.6
842,921 - AO356_03805 0.22 +0.1
842,922 + AO356_03805 0.22 -0.6
842,922 + AO356_03805 0.22 -1.2
842,923 - AO356_03805 0.22 +0.6
842,923 - AO356_03805 0.22 +0.6
842,980 - AO356_03805 0.25 +0.6
843,070 - AO356_03805 0.31 +1.3
843,070 - AO356_03805 0.31 +0.7

Or see this region's nucleotide sequence