Strain Fitness in Sinorhizobium meliloti 1021 around SMc03888

Experiment: D-Sorbitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03887 and SMc03888 are separated by 9 nucleotidesSMc03888 and SMc03889 are separated by 169 nucleotides SMc03887: SMc03887 - amino acid efflux protein, at 3,554,360 to 3,555,007 SMc03887 SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270 SMc03888 SMc03889: SMc03889 - transporter, at 3,556,440 to 3,557,579 SMc03889 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -1 0 1at 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.128 kb on - strandat 3554.128 kb on - strandat 3554.128 kb on - strandat 3554.129 kb on + strandat 3554.129 kb on + strandat 3554.129 kb on + strandat 3554.130 kb on - strandat 3554.262 kb on + strandat 3554.325 kb on + strandat 3554.326 kb on - strandat 3554.384 kb on + strandat 3554.417 kb on + strandat 3554.417 kb on + strandat 3554.417 kb on + strandat 3554.418 kb on - strandat 3554.418 kb on - strandat 3554.419 kb on + strandat 3554.531 kb on + strand, within SMc03887at 3554.531 kb on + strand, within SMc03887at 3554.624 kb on + strand, within SMc03887at 3554.624 kb on + strand, within SMc03887at 3554.624 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.645 kb on - strand, within SMc03887at 3555.016 kb on - strandat 3555.018 kb on + strandat 3556.589 kb on - strand, within SMc03889at 3556.640 kb on + strand, within SMc03889at 3557.179 kb on + strand, within SMc03889at 3557.180 kb on - strand, within SMc03889

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
remove
3,554,127 + +0.2
3,554,127 + +0.1
3,554,127 + +0.1
3,554,127 + -0.3
3,554,127 + -0.2
3,554,127 + +0.0
3,554,127 + -0.1
3,554,127 + +0.7
3,554,127 + +0.4
3,554,128 - +1.0
3,554,128 - -0.0
3,554,128 - -0.3
3,554,129 + +0.4
3,554,129 + +0.1
3,554,129 + -0.3
3,554,130 - +0.6
3,554,262 + +1.6
3,554,325 + +0.0
3,554,326 - +0.2
3,554,384 + +0.8
3,554,417 + -0.3
3,554,417 + -0.1
3,554,417 + -1.1
3,554,418 - +0.3
3,554,418 - -0.1
3,554,419 + +0.1
3,554,531 + SMc03887 0.26 +0.0
3,554,531 + SMc03887 0.26 -0.6
3,554,624 + SMc03887 0.41 -0.1
3,554,624 + SMc03887 0.41 -0.8
3,554,624 + SMc03887 0.41 -0.6
3,554,642 + SMc03887 0.44 -0.4
3,554,642 + SMc03887 0.44 -0.4
3,554,642 + SMc03887 0.44 +1.2
3,554,642 + SMc03887 0.44 +0.0
3,554,645 - SMc03887 0.44 -0.8
3,555,016 - -0.1
3,555,018 + -0.5
3,556,589 - SMc03889 0.13 -0.2
3,556,640 + SMc03889 0.18 -1.1
3,557,179 + SMc03889 0.65 -0.4
3,557,180 - SMc03889 0.65 -1.0

Or see this region's nucleotide sequence