Strain Fitness in Sinorhizobium meliloti 1021 around SMc02334

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02460 and SMc02333 are separated by 2 nucleotidesSMc02333 and SMc02334 are separated by 4 nucleotidesSMc02334 and SMc02335 overlap by 4 nucleotides SMc02460: SMc02460 - hypothetical protein, at 2,751,005 to 2,751,895 SMc02460 SMc02333: SMc02333 - hypothetical protein, at 2,751,898 to 2,752,644 SMc02333 SMc02334: SMc02334 - pentose kinase transmembrane protein, at 2,752,649 to 2,754,196 SMc02334 SMc02335: SMc02335 - pentose kinase, at 2,754,193 to 2,755,722 SMc02335 Position (kb) 2752 2753 2754 2755Strain fitness (log2 ratio) -2 -1 0 1at 2751.746 kb on + strand, within SMc02460at 2751.747 kb on - strand, within SMc02460at 2751.747 kb on - strand, within SMc02460at 2751.747 kb on - strand, within SMc02460at 2751.865 kb on - strandat 2751.870 kb on - strandat 2751.873 kb on + strandat 2751.873 kb on + strandat 2751.894 kb on - strandat 2751.894 kb on - strandat 2751.894 kb on - strandat 2751.908 kb on + strandat 2751.908 kb on + strandat 2751.909 kb on - strandat 2751.909 kb on - strandat 2751.970 kb on - strandat 2752.161 kb on + strand, within SMc02333at 2752.161 kb on + strand, within SMc02333at 2752.161 kb on + strand, within SMc02333at 2752.162 kb on - strand, within SMc02333at 2752.760 kb on + strandat 2752.810 kb on + strand, within SMc02334at 2752.810 kb on + strand, within SMc02334at 2752.945 kb on - strand, within SMc02334at 2752.948 kb on + strand, within SMc02334at 2752.949 kb on - strand, within SMc02334at 2753.054 kb on + strand, within SMc02334at 2753.055 kb on - strand, within SMc02334at 2753.055 kb on - strand, within SMc02334at 2753.165 kb on - strand, within SMc02334at 2753.183 kb on + strand, within SMc02334at 2753.205 kb on - strand, within SMc02334at 2753.225 kb on + strand, within SMc02334at 2753.226 kb on - strand, within SMc02334at 2753.226 kb on - strand, within SMc02334at 2753.373 kb on + strand, within SMc02334at 2753.373 kb on + strand, within SMc02334at 2753.374 kb on - strand, within SMc02334at 2753.426 kb on + strand, within SMc02334at 2753.427 kb on - strand, within SMc02334at 2754.105 kb on - strandat 2754.105 kb on - strandat 2754.429 kb on - strand, within SMc02335at 2754.562 kb on + strand, within SMc02335at 2754.562 kb on + strand, within SMc02335at 2754.562 kb on + strand, within SMc02335at 2754.563 kb on - strand, within SMc02335at 2754.563 kb on - strand, within SMc02335at 2754.683 kb on - strand, within SMc02335at 2754.683 kb on - strand, within SMc02335at 2754.683 kb on - strand, within SMc02335

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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2,751,746 + SMc02460 0.83 +0.2
2,751,747 - SMc02460 0.83 +0.6
2,751,747 - SMc02460 0.83 +0.7
2,751,747 - SMc02460 0.83 +0.5
2,751,865 - +0.2
2,751,870 - -0.6
2,751,873 + -0.8
2,751,873 + +0.4
2,751,894 - -0.3
2,751,894 - +1.0
2,751,894 - -0.2
2,751,908 + -0.2
2,751,908 + -0.7
2,751,909 - -0.4
2,751,909 - -1.9
2,751,970 - -0.3
2,752,161 + SMc02333 0.35 -0.2
2,752,161 + SMc02333 0.35 +0.2
2,752,161 + SMc02333 0.35 -0.2
2,752,162 - SMc02333 0.35 -0.3
2,752,760 + -0.7
2,752,810 + SMc02334 0.10 +0.5
2,752,810 + SMc02334 0.10 +0.8
2,752,945 - SMc02334 0.19 -0.0
2,752,948 + SMc02334 0.19 -0.2
2,752,949 - SMc02334 0.19 +0.8
2,753,054 + SMc02334 0.26 +0.5
2,753,055 - SMc02334 0.26 -0.6
2,753,055 - SMc02334 0.26 -0.5
2,753,165 - SMc02334 0.33 +0.4
2,753,183 + SMc02334 0.34 +0.4
2,753,205 - SMc02334 0.36 +0.2
2,753,225 + SMc02334 0.37 +0.0
2,753,226 - SMc02334 0.37 -0.2
2,753,226 - SMc02334 0.37 -1.2
2,753,373 + SMc02334 0.47 -0.0
2,753,373 + SMc02334 0.47 -1.3
2,753,374 - SMc02334 0.47 -0.6
2,753,426 + SMc02334 0.50 -0.0
2,753,427 - SMc02334 0.50 -0.4
2,754,105 - -0.1
2,754,105 - +0.8
2,754,429 - SMc02335 0.15 -0.0
2,754,562 + SMc02335 0.24 -1.7
2,754,562 + SMc02335 0.24 +0.7
2,754,562 + SMc02335 0.24 +1.2
2,754,563 - SMc02335 0.24 +0.5
2,754,563 - SMc02335 0.24 +0.2
2,754,683 - SMc02335 0.32 +0.1
2,754,683 - SMc02335 0.32 -0.3
2,754,683 - SMc02335 0.32 -0.2

Or see this region's nucleotide sequence