Strain Fitness in Sinorhizobium meliloti 1021 around SMc02170

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02171 and SMc02170 are separated by 281 nucleotidesSMc02170 and SMc02169 overlap by 1 nucleotidesSMc02169 and SMc02167 overlap by 4 nucleotides SMc02171: SMc02171 - periplasmic binding ABC transporter protein, at 523,892 to 524,917 SMc02171 SMc02170: SMc02170 - ABC transporter permease, at 525,199 to 526,281 SMc02170 SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063 SMc02169 SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680 SMc02167 Position (kb) 525 526 527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 524.691 kb on + strand, within SMc02171at 524.732 kb on + strand, within SMc02171at 524.801 kb on - strand, within SMc02171at 525.272 kb on + strandat 525.273 kb on - strandat 525.273 kb on - strandat 525.273 kb on - strandat 525.294 kb on + strandat 525.629 kb on - strand, within SMc02170at 525.672 kb on + strand, within SMc02170at 525.824 kb on - strand, within SMc02170at 525.865 kb on + strand, within SMc02170at 525.865 kb on + strand, within SMc02170at 525.895 kb on + strand, within SMc02170at 525.895 kb on + strand, within SMc02170at 525.895 kb on + strand, within SMc02170at 525.895 kb on + strand, within SMc02170at 525.896 kb on - strand, within SMc02170at 525.902 kb on - strand, within SMc02170at 525.902 kb on - strand, within SMc02170at 525.973 kb on + strand, within SMc02170at 525.974 kb on - strand, within SMc02170at 525.974 kb on - strand, within SMc02170at 525.976 kb on - strand, within SMc02170at 525.976 kb on - strand, within SMc02170at 525.976 kb on - strand, within SMc02170at 526.065 kb on + strand, within SMc02170at 526.210 kb on + strandat 526.210 kb on + strandat 526.211 kb on - strandat 526.211 kb on - strandat 526.272 kb on - strandat 526.327 kb on - strandat 526.435 kb on + strand, within SMc02169at 527.152 kb on + strand, within SMc02167

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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524,691 + SMc02171 0.78 -1.0
524,732 + SMc02171 0.82 +0.3
524,801 - SMc02171 0.89 -2.1
525,272 + -0.1
525,273 - -3.2
525,273 - -1.2
525,273 - -3.2
525,294 + -1.8
525,629 - SMc02170 0.40 -2.0
525,672 + SMc02170 0.44 +1.7
525,824 - SMc02170 0.58 -3.2
525,865 + SMc02170 0.61 -0.8
525,865 + SMc02170 0.61 -0.2
525,895 + SMc02170 0.64 -1.8
525,895 + SMc02170 0.64 +1.0
525,895 + SMc02170 0.64 -2.5
525,895 + SMc02170 0.64 -0.5
525,896 - SMc02170 0.64 -2.0
525,902 - SMc02170 0.65 -3.2
525,902 - SMc02170 0.65 -4.5
525,973 + SMc02170 0.71 -1.1
525,974 - SMc02170 0.72 -0.2
525,974 - SMc02170 0.72 -1.8
525,976 - SMc02170 0.72 -3.0
525,976 - SMc02170 0.72 -2.9
525,976 - SMc02170 0.72 -2.9
526,065 + SMc02170 0.80 +0.7
526,210 + +1.1
526,210 + +1.2
526,211 - -2.3
526,211 - -4.1
526,272 - -2.8
526,327 - -3.2
526,435 + SMc02169 0.20 -2.5
527,152 + SMc02167 0.15 -1.7

Or see this region's nucleotide sequence