Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02170 and SMc02169 overlap by 1 nucleotides SMc02169 and SMc02167 overlap by 4 nucleotides SMc02167 and SMc02166 are separated by 189 nucleotides
SMc02170: SMc02170 - ABC transporter permease, at 525,199 to 526,281
SMc02170
SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063
SMc02169
SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680
SMc02167
SMc02166: SMc02166 - dihydroorotase, at 527,870 to 528,913
SMc02166
Position (kb) 527
528 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 526.065 kb on + strand, within SMc02170 at 526.210 kb on + strand at 526.210 kb on + strand at 526.211 kb on - strand at 526.211 kb on - strand at 526.272 kb on - strand at 526.327 kb on - strand at 526.435 kb on + strand, within SMc02169 at 527.152 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.429 kb on - strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.502 kb on - strand, within SMc02167 at 527.561 kb on + strand, within SMc02167 at 527.574 kb on - strand, within SMc02167 at 527.604 kb on - strand, within SMc02167 at 527.616 kb on + strand, within SMc02167 at 527.617 kb on - strand, within SMc02167 at 527.679 kb on - strand at 527.884 kb on + strand at 527.885 kb on - strand at 527.885 kb on - strand at 527.887 kb on - strand at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.170 kb on + strand, within SMc02166 at 528.171 kb on - strand, within SMc02166 at 528.417 kb on - strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.518 kb on + strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 528.666 kb on - strand, within SMc02166
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 526,065 + SMc02170 0.80 +0.7 526,210 + +1.1 526,210 + +1.2 526,211 - -2.3 526,211 - -4.1 526,272 - -2.8 526,327 - -3.2 526,435 + SMc02169 0.20 -2.5 527,152 + SMc02167 0.15 -1.7 527,428 + SMc02167 0.59 +0.5 527,428 + SMc02167 0.59 -1.2 527,428 + SMc02167 0.59 -0.6 527,428 + SMc02167 0.59 -0.1 527,429 - SMc02167 0.59 -4.1 527,450 + SMc02167 0.63 -1.2 527,450 + SMc02167 0.63 +0.3 527,450 + SMc02167 0.63 -1.4 527,502 - SMc02167 0.71 -2.8 527,561 + SMc02167 0.81 -0.5 527,574 - SMc02167 0.83 -3.5 527,604 - SMc02167 0.88 -3.5 527,616 + SMc02167 0.90 -0.6 527,617 - SMc02167 0.90 -2.5 527,679 - -4.7 527,884 + -4.6 527,885 - -4.6 527,885 - -4.4 527,887 - -3.2 528,096 - SMc02166 0.22 -3.5 528,096 - SMc02166 0.22 -5.6 528,096 - SMc02166 0.22 -3.6 528,170 + SMc02166 0.29 -3.4 528,171 - SMc02166 0.29 -1.7 528,417 - SMc02166 0.52 -3.2 528,515 + SMc02166 0.62 -1.9 528,515 + SMc02166 0.62 -4.6 528,516 - SMc02166 0.62 -4.6 528,516 - SMc02166 0.62 -4.2 528,518 + SMc02166 0.62 -3.8 528,519 - SMc02166 0.62 -3.7 528,519 - SMc02166 0.62 -4.1 528,665 + SMc02166 0.76 -4.7 528,665 + SMc02166 0.76 -2.7 528,665 + SMc02166 0.76 -4.8 528,666 - SMc02166 0.76 -3.7 528,666 - SMc02166 0.76 -0.1
Or see this region's nucleotide sequence