Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01499 and SMc01498 are separated by 30 nucleotides SMc01498 and SMc01497 are separated by 5 nucleotides SMc01497 and SMc01496 are separated by 189 nucleotides
SMc01499: SMc01499 - ATP-binding transport ABC transporter protein, at 2,630,146 to 2,631,147
SMc01499
SMc01498: SMc01498 - sorbitol/mannitol transport inner membrane protein, at 2,631,178 to 2,632,008
SMc01498
SMc01497: SMc01497 - sorbitol/mannitol transport inner membrane transmembrane protein, at 2,632,014 to 2,632,886
SMc01497
SMc01496: SMc01496 - sorbitol-binding periplasmic protein, at 2,633,076 to 2,634,386
SMc01496
Position (kb)
2632
2633 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.121 kb on + strand at 2631.122 kb on - strand at 2631.153 kb on + strand at 2631.154 kb on - strand at 2631.159 kb on + strand at 2631.180 kb on - strand at 2631.311 kb on + strand, within SMc01498 at 2631.449 kb on + strand, within SMc01498 at 2631.449 kb on + strand, within SMc01498 at 2631.449 kb on + strand, within SMc01498 at 2631.450 kb on - strand, within SMc01498 at 2631.450 kb on - strand, within SMc01498 at 2631.450 kb on - strand, within SMc01498 at 2631.530 kb on + strand, within SMc01498 at 2631.530 kb on + strand, within SMc01498 at 2631.531 kb on - strand, within SMc01498 at 2631.571 kb on + strand, within SMc01498 at 2631.572 kb on - strand, within SMc01498 at 2631.620 kb on - strand, within SMc01498 at 2631.620 kb on - strand, within SMc01498 at 2631.626 kb on + strand, within SMc01498 at 2631.626 kb on + strand, within SMc01498 at 2631.833 kb on + strand, within SMc01498 at 2631.833 kb on + strand, within SMc01498 at 2631.834 kb on - strand, within SMc01498 at 2632.282 kb on + strand, within SMc01497 at 2632.282 kb on + strand, within SMc01497 at 2632.283 kb on - strand, within SMc01497 at 2632.297 kb on - strand, within SMc01497 at 2632.714 kb on + strand, within SMc01497 at 2632.715 kb on - strand, within SMc01497 at 2632.720 kb on + strand, within SMc01497 at 2632.720 kb on + strand, within SMc01497 at 2632.769 kb on - strand, within SMc01497 at 2632.769 kb on - strand, within SMc01497 at 2632.786 kb on + strand, within SMc01497 at 2632.934 kb on - strand at 2633.243 kb on - strand, within SMc01496 at 2633.710 kb on + strand, within SMc01496 at 2633.711 kb on - strand, within SMc01496 at 2633.857 kb on + strand, within SMc01496
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 2,631,082 + -2.9 2,631,082 + -2.7 2,631,082 + -2.6 2,631,082 + -2.7 2,631,121 + -2.0 2,631,122 - -2.5 2,631,153 + -5.0 2,631,154 - -1.9 2,631,159 + -0.7 2,631,180 - -3.1 2,631,311 + SMc01498 0.16 -2.6 2,631,449 + SMc01498 0.33 -0.0 2,631,449 + SMc01498 0.33 -1.8 2,631,449 + SMc01498 0.33 -1.9 2,631,450 - SMc01498 0.33 -1.3 2,631,450 - SMc01498 0.33 -0.2 2,631,450 - SMc01498 0.33 -2.7 2,631,530 + SMc01498 0.42 -3.1 2,631,530 + SMc01498 0.42 -2.3 2,631,531 - SMc01498 0.42 -0.8 2,631,571 + SMc01498 0.47 -2.5 2,631,572 - SMc01498 0.47 -1.1 2,631,620 - SMc01498 0.53 -1.9 2,631,620 - SMc01498 0.53 -1.0 2,631,626 + SMc01498 0.54 -2.5 2,631,626 + SMc01498 0.54 -2.4 2,631,833 + SMc01498 0.79 -2.2 2,631,833 + SMc01498 0.79 -1.6 2,631,834 - SMc01498 0.79 -1.6 2,632,282 + SMc01497 0.31 -2.6 2,632,282 + SMc01497 0.31 -1.7 2,632,283 - SMc01497 0.31 -0.1 2,632,297 - SMc01497 0.32 -2.4 2,632,714 + SMc01497 0.80 -2.9 2,632,715 - SMc01497 0.80 -1.2 2,632,720 + SMc01497 0.81 -2.5 2,632,720 + SMc01497 0.81 -2.6 2,632,769 - SMc01497 0.86 -0.5 2,632,769 - SMc01497 0.86 -1.8 2,632,786 + SMc01497 0.88 -1.5 2,632,934 - -0.6 2,633,243 - SMc01496 0.13 -1.9 2,633,710 + SMc01496 0.48 -1.3 2,633,711 - SMc01496 0.48 -2.0 2,633,857 + SMc01496 0.60 -2.7
Or see this region's nucleotide sequence