Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21073

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21071 and SM_b21072 are separated by 44 nucleotidesSM_b21072 and SM_b21073 are separated by 427 nucleotidesSM_b21073 and SM_b21074 are separated by 71 nucleotides SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736 _b21071 SM_b21072: SM_b21072 - hypothetical protein, at 708,781 to 709,035 _b21072 SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830 _b21073 SM_b21074: SM_b21074 - glycosyltransferase, at 710,902 to 711,801 _b21074 Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1 2at 708.473 kb on - strand, within SM_b21071at 708.597 kb on + strand, within SM_b21071at 708.597 kb on + strand, within SM_b21071at 708.597 kb on + strand, within SM_b21071at 708.598 kb on - strand, within SM_b21071at 708.598 kb on - strand, within SM_b21071at 708.598 kb on - strand, within SM_b21071at 708.598 kb on - strand, within SM_b21071at 708.620 kb on + strand, within SM_b21071at 708.621 kb on - strand, within SM_b21071at 708.650 kb on + strand, within SM_b21071at 708.651 kb on - strand, within SM_b21071at 708.651 kb on - strand, within SM_b21071at 708.651 kb on - strand, within SM_b21071at 708.655 kb on - strand, within SM_b21071at 708.695 kb on - strandat 708.734 kb on + strandat 708.734 kb on + strandat 708.734 kb on + strandat 708.755 kb on + strandat 708.755 kb on + strandat 708.756 kb on - strandat 708.845 kb on + strand, within SM_b21072at 708.846 kb on - strand, within SM_b21072at 708.846 kb on - strand, within SM_b21072at 708.846 kb on - strand, within SM_b21072at 708.849 kb on + strand, within SM_b21072at 708.850 kb on - strand, within SM_b21072at 708.856 kb on + strand, within SM_b21072at 708.856 kb on + strand, within SM_b21072at 708.856 kb on + strand, within SM_b21072at 708.872 kb on + strand, within SM_b21072at 708.873 kb on - strand, within SM_b21072at 708.873 kb on - strand, within SM_b21072at 709.035 kb on + strandat 709.147 kb on + strandat 709.178 kb on + strandat 709.179 kb on - strandat 709.179 kb on - strandat 709.179 kb on - strandat 709.179 kb on - strandat 709.179 kb on - strandat 709.179 kb on - strandat 709.291 kb on + strandat 709.292 kb on - strandat 709.382 kb on + strandat 709.382 kb on + strandat 709.382 kb on + strandat 709.382 kb on + strandat 709.382 kb on + strandat 709.382 kb on + strandat 709.383 kb on - strandat 709.383 kb on - strandat 709.390 kb on + strandat 709.390 kb on + strandat 709.424 kb on + strandat 709.444 kb on + strandat 709.444 kb on + strandat 709.444 kb on + strandat 709.445 kb on - strandat 709.445 kb on - strandat 709.452 kb on + strandat 709.453 kb on - strandat 709.453 kb on - strandat 709.465 kb on - strandat 709.662 kb on + strand, within SM_b21073at 709.662 kb on + strand, within SM_b21073at 709.737 kb on - strand, within SM_b21073at 709.821 kb on + strand, within SM_b21073at 709.822 kb on - strand, within SM_b21073at 709.861 kb on + strand, within SM_b21073at 709.901 kb on + strand, within SM_b21073at 709.918 kb on - strand, within SM_b21073at 709.918 kb on - strand, within SM_b21073at 709.979 kb on + strand, within SM_b21073at 709.980 kb on - strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.988 kb on + strand, within SM_b21073at 709.989 kb on - strand, within SM_b21073at 709.989 kb on - strand, within SM_b21073at 709.989 kb on - strand, within SM_b21073at 710.058 kb on - strand, within SM_b21073at 710.114 kb on + strand, within SM_b21073at 710.230 kb on + strand, within SM_b21073at 710.231 kb on - strand, within SM_b21073at 710.231 kb on - strand, within SM_b21073at 710.376 kb on - strand, within SM_b21073at 710.445 kb on + strand, within SM_b21073at 710.445 kb on + strand, within SM_b21073at 710.445 kb on + strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.446 kb on - strand, within SM_b21073at 710.503 kb on + strand, within SM_b21073at 710.504 kb on - strand, within SM_b21073at 710.504 kb on - strand, within SM_b21073at 710.518 kb on + strand, within SM_b21073at 710.533 kb on - strand, within SM_b21073at 710.620 kb on + strand, within SM_b21073at 710.647 kb on + strand, within SM_b21073at 710.687 kb on + strand, within SM_b21073at 710.688 kb on - strand, within SM_b21073at 710.712 kb on + strandat 710.712 kb on + strandat 710.748 kb on - strandat 710.748 kb on - strandat 710.803 kb on + strandat 710.804 kb on - strandat 710.830 kb on + strandat 710.903 kb on + strandat 710.903 kb on + strandat 710.911 kb on + strandat 710.925 kb on - strandat 710.966 kb on - strandat 710.966 kb on - strandat 710.968 kb on - strandat 711.002 kb on + strand, within SM_b21074at 711.002 kb on + strand, within SM_b21074at 711.002 kb on + strand, within SM_b21074at 711.003 kb on - strand, within SM_b21074at 711.003 kb on - strand, within SM_b21074at 711.003 kb on - strand, within SM_b21074at 711.053 kb on - strand, within SM_b21074at 711.053 kb on - strand, within SM_b21074at 711.072 kb on + strand, within SM_b21074at 711.073 kb on - strand, within SM_b21074at 711.101 kb on + strand, within SM_b21074at 711.323 kb on + strand, within SM_b21074at 711.324 kb on - strand, within SM_b21074at 711.324 kb on - strand, within SM_b21074at 711.513 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.631 kb on + strand, within SM_b21074at 711.785 kb on - strandat 711.785 kb on - strandat 711.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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708,473 - SM_b21071 0.59 -1.0
708,597 + SM_b21071 0.78 -0.4
708,597 + SM_b21071 0.78 -0.6
708,597 + SM_b21071 0.78 -0.7
708,598 - SM_b21071 0.79 -0.2
708,598 - SM_b21071 0.79 +0.8
708,598 - SM_b21071 0.79 +0.4
708,598 - SM_b21071 0.79 -0.3
708,620 + SM_b21071 0.82 +0.1
708,621 - SM_b21071 0.82 +0.7
708,650 + SM_b21071 0.87 +0.6
708,651 - SM_b21071 0.87 -0.0
708,651 - SM_b21071 0.87 +0.5
708,651 - SM_b21071 0.87 -0.4
708,655 - SM_b21071 0.87 -0.8
708,695 - -0.0
708,734 + -0.4
708,734 + +0.1
708,734 + -0.2
708,755 + -0.2
708,755 + +0.7
708,756 - +0.5
708,845 + SM_b21072 0.25 +0.2
708,846 - SM_b21072 0.25 -0.5
708,846 - SM_b21072 0.25 -0.5
708,846 - SM_b21072 0.25 +0.4
708,849 + SM_b21072 0.27 +1.1
708,850 - SM_b21072 0.27 -0.2
708,856 + SM_b21072 0.29 +0.5
708,856 + SM_b21072 0.29 -0.5
708,856 + SM_b21072 0.29 +0.4
708,872 + SM_b21072 0.36 +0.8
708,873 - SM_b21072 0.36 -0.2
708,873 - SM_b21072 0.36 -0.0
709,035 + -0.6
709,147 + -0.2
709,178 + -0.5
709,179 - -0.1
709,179 - -0.7
709,179 - -0.1
709,179 - +0.7
709,179 - -0.2
709,179 - +0.4
709,291 + -0.1
709,292 - +0.1
709,382 + +1.1
709,382 + -0.2
709,382 + -0.5
709,382 + +0.0
709,382 + +0.1
709,382 + -0.1
709,383 - +0.5
709,383 - -0.3
709,390 + +0.1
709,390 + -0.4
709,424 + +0.1
709,444 + +0.0
709,444 + -0.5
709,444 + +0.3
709,445 - +0.7
709,445 - +0.4
709,452 + +0.4
709,453 - +0.0
709,453 - -0.3
709,465 - +0.6
709,662 + SM_b21073 0.15 +0.3
709,662 + SM_b21073 0.15 +0.2
709,737 - SM_b21073 0.20 +0.4
709,821 + SM_b21073 0.26 -0.1
709,822 - SM_b21073 0.26 -0.3
709,861 + SM_b21073 0.29 -0.5
709,901 + SM_b21073 0.32 +0.6
709,918 - SM_b21073 0.33 +0.1
709,918 - SM_b21073 0.33 -2.4
709,979 + SM_b21073 0.38 -0.5
709,980 - SM_b21073 0.38 +0.2
709,988 + SM_b21073 0.38 +0.1
709,988 + SM_b21073 0.38 -0.2
709,988 + SM_b21073 0.38 -0.2
709,988 + SM_b21073 0.38 +0.3
709,988 + SM_b21073 0.38 -0.2
709,989 - SM_b21073 0.38 +0.2
709,989 - SM_b21073 0.38 -0.3
709,989 - SM_b21073 0.38 -0.1
710,058 - SM_b21073 0.43 +0.4
710,114 + SM_b21073 0.48 +0.6
710,230 + SM_b21073 0.56 -0.5
710,231 - SM_b21073 0.56 +0.9
710,231 - SM_b21073 0.56 +1.0
710,376 - SM_b21073 0.67 +0.2
710,445 + SM_b21073 0.72 +0.4
710,445 + SM_b21073 0.72 +0.4
710,445 + SM_b21073 0.72 -0.0
710,446 - SM_b21073 0.72 +0.6
710,446 - SM_b21073 0.72 -0.1
710,446 - SM_b21073 0.72 +0.0
710,446 - SM_b21073 0.72 -0.0
710,446 - SM_b21073 0.72 -0.3
710,446 - SM_b21073 0.72 +0.3
710,503 + SM_b21073 0.76 +1.4
710,504 - SM_b21073 0.76 -1.4
710,504 - SM_b21073 0.76 -0.1
710,518 + SM_b21073 0.77 +2.5
710,533 - SM_b21073 0.78 -0.4
710,620 + SM_b21073 0.85 +0.4
710,647 + SM_b21073 0.87 -0.0
710,687 + SM_b21073 0.89 +0.2
710,688 - SM_b21073 0.90 -0.1
710,712 + +0.2
710,712 + +1.1
710,748 - +0.0
710,748 - -0.4
710,803 + +0.5
710,804 - +1.1
710,830 + -1.0
710,903 + +0.4
710,903 + +0.0
710,911 + +0.2
710,925 - -0.5
710,966 - +0.5
710,966 - +0.1
710,968 - +0.2
711,002 + SM_b21074 0.11 +0.4
711,002 + SM_b21074 0.11 +0.0
711,002 + SM_b21074 0.11 +0.5
711,003 - SM_b21074 0.11 +0.7
711,003 - SM_b21074 0.11 -0.1
711,003 - SM_b21074 0.11 -0.6
711,053 - SM_b21074 0.17 +0.1
711,053 - SM_b21074 0.17 +0.3
711,072 + SM_b21074 0.19 +0.2
711,073 - SM_b21074 0.19 -0.3
711,101 + SM_b21074 0.22 +0.1
711,323 + SM_b21074 0.47 +0.0
711,324 - SM_b21074 0.47 +0.7
711,324 - SM_b21074 0.47 +0.2
711,513 + SM_b21074 0.68 -0.5
711,610 + SM_b21074 0.79 -0.0
711,610 + SM_b21074 0.79 -0.3
711,610 + SM_b21074 0.79 -0.3
711,610 + SM_b21074 0.79 -0.1
711,611 - SM_b21074 0.79 +0.2
711,611 - SM_b21074 0.79 +1.4
711,611 - SM_b21074 0.79 +0.0
711,611 - SM_b21074 0.79 -0.1
711,631 + SM_b21074 0.81 +1.1
711,785 - +0.1
711,785 - +0.1
711,808 + -0.1

Or see this region's nucleotide sequence