Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5051

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5050 and Psyr_5051 are separated by 267 nucleotidesPsyr_5051 and Psyr_5052 are separated by 281 nucleotides Psyr_5050: Psyr_5050 - transcriptional regulator, LysR family, at 5,990,865 to 5,991,812 _5050 Psyr_5051: Psyr_5051 - Aspartate ammonia-lyase, at 5,992,080 to 5,993,504 _5051 Psyr_5052: Psyr_5052 - Sodium:alanine symporter, at 5,993,786 to 5,995,237 _5052 Position (kb) 5992 5993 5994Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5991.091 kb on + strand, within Psyr_5050at 5991.167 kb on - strand, within Psyr_5050at 5991.167 kb on - strand, within Psyr_5050at 5991.167 kb on - strand, within Psyr_5050at 5991.167 kb on - strand, within Psyr_5050at 5991.316 kb on + strand, within Psyr_5050at 5991.317 kb on - strand, within Psyr_5050at 5991.317 kb on - strand, within Psyr_5050at 5991.869 kb on + strandat 5991.870 kb on - strandat 5991.870 kb on - strandat 5991.935 kb on - strandat 5991.969 kb on - strandat 5992.135 kb on + strandat 5992.135 kb on + strandat 5992.136 kb on - strandat 5992.149 kb on + strandat 5992.149 kb on + strandat 5992.149 kb on + strandat 5992.150 kb on - strandat 5992.150 kb on - strandat 5992.153 kb on - strandat 5992.228 kb on + strand, within Psyr_5051at 5992.228 kb on + strand, within Psyr_5051at 5992.229 kb on - strand, within Psyr_5051at 5993.193 kb on + strand, within Psyr_5051at 5993.193 kb on + strand, within Psyr_5051at 5993.194 kb on - strand, within Psyr_5051at 5993.337 kb on + strand, within Psyr_5051at 5993.338 kb on - strand, within Psyr_5051at 5993.338 kb on - strand, within Psyr_5051at 5993.338 kb on - strand, within Psyr_5051at 5993.338 kb on - strand, within Psyr_5051at 5993.338 kb on - strand, within Psyr_5051at 5993.338 kb on - strand, within Psyr_5051at 5993.545 kb on + strandat 5993.648 kb on + strandat 5993.649 kb on - strandat 5993.649 kb on - strandat 5993.649 kb on - strandat 5993.674 kb on + strandat 5993.674 kb on + strandat 5993.675 kb on - strandat 5993.722 kb on + strandat 5993.722 kb on + strandat 5993.730 kb on + strandat 5993.749 kb on + strandat 5993.750 kb on - strandat 5993.750 kb on - strandat 5993.750 kb on - strandat 5993.778 kb on + strandat 5993.842 kb on - strandat 5993.855 kb on + strandat 5993.856 kb on - strandat 5994.001 kb on + strand, within Psyr_5052at 5994.122 kb on + strand, within Psyr_5052at 5994.122 kb on + strand, within Psyr_5052at 5994.122 kb on + strand, within Psyr_5052at 5994.123 kb on - strand, within Psyr_5052at 5994.123 kb on - strand, within Psyr_5052at 5994.136 kb on + strand, within Psyr_5052at 5994.170 kb on + strand, within Psyr_5052at 5994.170 kb on + strand, within Psyr_5052at 5994.170 kb on + strand, within Psyr_5052at 5994.170 kb on + strand, within Psyr_5052at 5994.171 kb on - strand, within Psyr_5052at 5994.171 kb on - strand, within Psyr_5052at 5994.219 kb on + strand, within Psyr_5052at 5994.336 kb on + strand, within Psyr_5052at 5994.336 kb on + strand, within Psyr_5052at 5994.337 kb on - strand, within Psyr_5052at 5994.337 kb on - strand, within Psyr_5052at 5994.337 kb on - strand, within Psyr_5052at 5994.419 kb on + strand, within Psyr_5052at 5994.419 kb on + strand, within Psyr_5052at 5994.419 kb on + strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.420 kb on - strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.437 kb on + strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.438 kb on - strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.478 kb on + strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052at 5994.479 kb on - strand, within Psyr_5052

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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5,991,091 + Psyr_5050 0.24 -1.5
5,991,167 - Psyr_5050 0.32 -0.6
5,991,167 - Psyr_5050 0.32 -0.4
5,991,167 - Psyr_5050 0.32 -0.1
5,991,167 - Psyr_5050 0.32 -0.2
5,991,316 + Psyr_5050 0.48 +0.8
5,991,317 - Psyr_5050 0.48 +0.7
5,991,317 - Psyr_5050 0.48 +0.7
5,991,869 + +0.7
5,991,870 - -0.3
5,991,870 - -2.4
5,991,935 - +1.1
5,991,969 - -0.4
5,992,135 + -0.2
5,992,135 + -2.7
5,992,136 - -0.9
5,992,149 + +0.2
5,992,149 + -0.0
5,992,149 + -0.7
5,992,150 - -2.6
5,992,150 - +1.2
5,992,153 - -0.5
5,992,228 + Psyr_5051 0.10 -1.8
5,992,228 + Psyr_5051 0.10 -0.9
5,992,229 - Psyr_5051 0.10 -0.3
5,993,193 + Psyr_5051 0.78 -1.3
5,993,193 + Psyr_5051 0.78 +0.0
5,993,194 - Psyr_5051 0.78 -1.1
5,993,337 + Psyr_5051 0.88 -0.8
5,993,338 - Psyr_5051 0.88 -1.5
5,993,338 - Psyr_5051 0.88 -0.7
5,993,338 - Psyr_5051 0.88 -0.4
5,993,338 - Psyr_5051 0.88 -1.6
5,993,338 - Psyr_5051 0.88 -0.4
5,993,338 - Psyr_5051 0.88 -1.1
5,993,545 + +0.2
5,993,648 + +0.3
5,993,649 - -0.5
5,993,649 - +0.5
5,993,649 - -1.3
5,993,674 + -0.6
5,993,674 + -1.0
5,993,675 - -0.7
5,993,722 + +1.2
5,993,722 + -0.2
5,993,730 + +0.1
5,993,749 + +0.2
5,993,750 - -0.3
5,993,750 - -0.4
5,993,750 - -0.4
5,993,778 + +0.2
5,993,842 - -1.4
5,993,855 + +0.2
5,993,856 - -1.4
5,994,001 + Psyr_5052 0.15 +1.6
5,994,122 + Psyr_5052 0.23 +0.9
5,994,122 + Psyr_5052 0.23 -0.5
5,994,122 + Psyr_5052 0.23 +0.4
5,994,123 - Psyr_5052 0.23 +1.4
5,994,123 - Psyr_5052 0.23 +0.2
5,994,136 + Psyr_5052 0.24 -0.5
5,994,170 + Psyr_5052 0.26 -0.6
5,994,170 + Psyr_5052 0.26 -1.7
5,994,170 + Psyr_5052 0.26 +0.0
5,994,170 + Psyr_5052 0.26 -0.9
5,994,171 - Psyr_5052 0.27 +0.3
5,994,171 - Psyr_5052 0.27 -0.5
5,994,219 + Psyr_5052 0.30 -0.9
5,994,336 + Psyr_5052 0.38 -0.2
5,994,336 + Psyr_5052 0.38 +1.0
5,994,337 - Psyr_5052 0.38 -0.9
5,994,337 - Psyr_5052 0.38 -0.4
5,994,337 - Psyr_5052 0.38 +0.2
5,994,419 + Psyr_5052 0.44 -0.7
5,994,419 + Psyr_5052 0.44 +2.3
5,994,419 + Psyr_5052 0.44 +0.8
5,994,420 - Psyr_5052 0.44 -0.1
5,994,420 - Psyr_5052 0.44 +1.8
5,994,420 - Psyr_5052 0.44 -0.4
5,994,420 - Psyr_5052 0.44 +0.0
5,994,420 - Psyr_5052 0.44 -3.0
5,994,437 + Psyr_5052 0.45 -0.2
5,994,437 + Psyr_5052 0.45 +0.2
5,994,437 + Psyr_5052 0.45 +0.6
5,994,437 + Psyr_5052 0.45 -0.4
5,994,437 + Psyr_5052 0.45 +0.4
5,994,437 + Psyr_5052 0.45 +2.0
5,994,437 + Psyr_5052 0.45 +0.4
5,994,437 + Psyr_5052 0.45 -0.1
5,994,437 + Psyr_5052 0.45 +0.2
5,994,437 + Psyr_5052 0.45 +0.3
5,994,438 - Psyr_5052 0.45 +0.4
5,994,438 - Psyr_5052 0.45 +2.0
5,994,438 - Psyr_5052 0.45 +0.1
5,994,438 - Psyr_5052 0.45 -0.1
5,994,438 - Psyr_5052 0.45 -0.2
5,994,438 - Psyr_5052 0.45 +0.4
5,994,438 - Psyr_5052 0.45 -1.3
5,994,438 - Psyr_5052 0.45 +1.2
5,994,438 - Psyr_5052 0.45 +0.1
5,994,478 + Psyr_5052 0.48 -1.1
5,994,478 + Psyr_5052 0.48 -0.0
5,994,478 + Psyr_5052 0.48 +1.0
5,994,479 - Psyr_5052 0.48 +1.2
5,994,479 - Psyr_5052 0.48 +1.4
5,994,479 - Psyr_5052 0.48 +0.6
5,994,479 - Psyr_5052 0.48 +0.5
5,994,479 - Psyr_5052 0.48 -1.9
5,994,479 - Psyr_5052 0.48 +0.4
5,994,479 - Psyr_5052 0.48 -0.1

Or see this region's nucleotide sequence