Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4860 and Psyr_4861 are separated by 711 nucleotides Psyr_4861 and Psyr_4862 overlap by 4 nucleotides Psyr_4862 and Psyr_4863 overlap by 4 nucleotides
Psyr_4860: Psyr_4860 - Integrase, catalytic region, at 5,767,943 to 5,768,749
_4860
Psyr_4861: Psyr_4861 - Binding-protein-dependent transport systems inner membrane component, at 5,769,461 to 5,770,342
_4861
Psyr_4862: Psyr_4862 - Binding-protein-dependent transport systems inner membrane component, at 5,770,339 to 5,771,259
_4862
Psyr_4863: Psyr_4863 - Spermidine/putrescine ABC transporter ATP-binding subunit, at 5,771,256 to 5,772,398
_4863
Position (kb) 5769
5770
5771 Strain fitness (log2 ratio) -2
-1
0
1 at 5768.498 kb on + strand, within Psyr_4860 at 5769.024 kb on + strand at 5769.268 kb on + strand at 5769.268 kb on + strand at 5769.268 kb on + strand at 5769.268 kb on + strand at 5769.297 kb on + strand at 5769.297 kb on + strand at 5769.791 kb on - strand, within Psyr_4861 at 5769.870 kb on - strand, within Psyr_4861 at 5769.870 kb on - strand, within Psyr_4861 at 5769.870 kb on - strand, within Psyr_4861 at 5769.897 kb on + strand, within Psyr_4861 at 5769.897 kb on + strand, within Psyr_4861 at 5769.897 kb on + strand, within Psyr_4861 at 5769.897 kb on + strand, within Psyr_4861 at 5769.897 kb on + strand, within Psyr_4861 at 5769.898 kb on - strand, within Psyr_4861 at 5769.898 kb on - strand, within Psyr_4861 at 5770.026 kb on - strand, within Psyr_4861 at 5770.137 kb on + strand, within Psyr_4861 at 5770.138 kb on - strand, within Psyr_4861 at 5770.203 kb on + strand, within Psyr_4861 at 5770.203 kb on + strand, within Psyr_4861 at 5770.203 kb on + strand, within Psyr_4861 at 5770.204 kb on - strand, within Psyr_4861 at 5770.204 kb on - strand, within Psyr_4861 at 5770.260 kb on + strand at 5770.260 kb on + strand at 5770.260 kb on + strand at 5770.260 kb on + strand at 5770.261 kb on - strand at 5770.261 kb on - strand at 5770.261 kb on - strand at 5770.261 kb on - strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.287 kb on + strand at 5770.288 kb on - strand at 5770.288 kb on - strand at 5770.288 kb on - strand at 5770.288 kb on - strand at 5770.341 kb on + strand at 5770.549 kb on + strand, within Psyr_4862 at 5770.683 kb on - strand, within Psyr_4862 at 5770.710 kb on - strand, within Psyr_4862 at 5770.710 kb on - strand, within Psyr_4862 at 5770.715 kb on + strand, within Psyr_4862 at 5770.715 kb on + strand, within Psyr_4862 at 5770.715 kb on + strand, within Psyr_4862 at 5770.716 kb on - strand, within Psyr_4862 at 5770.716 kb on - strand, within Psyr_4862 at 5770.730 kb on + strand, within Psyr_4862 at 5770.731 kb on - strand, within Psyr_4862 at 5770.731 kb on - strand, within Psyr_4862 at 5770.731 kb on - strand, within Psyr_4862 at 5770.731 kb on - strand, within Psyr_4862 at 5770.839 kb on - strand, within Psyr_4862 at 5771.009 kb on + strand, within Psyr_4862 at 5771.009 kb on + strand, within Psyr_4862 at 5771.010 kb on - strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.036 kb on + strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.037 kb on - strand, within Psyr_4862 at 5771.079 kb on - strand, within Psyr_4862 at 5771.079 kb on - strand, within Psyr_4862 at 5771.096 kb on + strand, within Psyr_4862 at 5771.096 kb on + strand, within Psyr_4862 at 5771.268 kb on + strand at 5771.299 kb on + strand at 5771.299 kb on + strand at 5771.299 kb on + strand at 5771.299 kb on + strand at 5771.299 kb on + strand at 5771.300 kb on - strand at 5771.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 5,768,498 + Psyr_4860 0.69 -0.5 5,769,024 + +0.6 5,769,268 + +0.1 5,769,268 + +0.8 5,769,268 + -0.5 5,769,268 + -1.0 5,769,297 + +1.1 5,769,297 + +0.5 5,769,791 - Psyr_4861 0.37 -1.2 5,769,870 - Psyr_4861 0.46 +0.2 5,769,870 - Psyr_4861 0.46 -0.8 5,769,870 - Psyr_4861 0.46 +1.0 5,769,897 + Psyr_4861 0.49 -2.4 5,769,897 + Psyr_4861 0.49 +0.0 5,769,897 + Psyr_4861 0.49 -2.4 5,769,897 + Psyr_4861 0.49 -0.2 5,769,897 + Psyr_4861 0.49 -2.6 5,769,898 - Psyr_4861 0.50 +0.4 5,769,898 - Psyr_4861 0.50 -1.0 5,770,026 - Psyr_4861 0.64 -0.8 5,770,137 + Psyr_4861 0.77 +0.2 5,770,138 - Psyr_4861 0.77 +0.1 5,770,203 + Psyr_4861 0.84 -1.7 5,770,203 + Psyr_4861 0.84 -0.3 5,770,203 + Psyr_4861 0.84 -0.1 5,770,204 - Psyr_4861 0.84 -1.4 5,770,204 - Psyr_4861 0.84 -0.3 5,770,260 + -0.9 5,770,260 + -2.0 5,770,260 + -1.0 5,770,260 + +0.5 5,770,261 - +1.2 5,770,261 - -0.5 5,770,261 - -0.1 5,770,261 - -0.1 5,770,287 + +0.0 5,770,287 + +1.0 5,770,287 + +0.8 5,770,287 + -1.0 5,770,287 + -0.6 5,770,287 + -2.5 5,770,287 + -0.2 5,770,287 + -0.1 5,770,288 - -0.4 5,770,288 - -1.4 5,770,288 - -0.5 5,770,288 - +0.0 5,770,341 + -0.9 5,770,549 + Psyr_4862 0.23 +1.2 5,770,683 - Psyr_4862 0.37 -0.8 5,770,710 - Psyr_4862 0.40 +0.2 5,770,710 - Psyr_4862 0.40 -0.9 5,770,715 + Psyr_4862 0.41 -0.7 5,770,715 + Psyr_4862 0.41 -0.0 5,770,715 + Psyr_4862 0.41 -1.0 5,770,716 - Psyr_4862 0.41 -0.0 5,770,716 - Psyr_4862 0.41 +0.4 5,770,730 + Psyr_4862 0.42 +0.6 5,770,731 - Psyr_4862 0.43 -1.8 5,770,731 - Psyr_4862 0.43 +0.5 5,770,731 - Psyr_4862 0.43 -0.3 5,770,731 - Psyr_4862 0.43 +0.6 5,770,839 - Psyr_4862 0.54 -0.7 5,771,009 + Psyr_4862 0.73 +0.3 5,771,009 + Psyr_4862 0.73 -1.4 5,771,010 - Psyr_4862 0.73 -0.1 5,771,036 + Psyr_4862 0.76 -1.3 5,771,036 + Psyr_4862 0.76 +0.5 5,771,036 + Psyr_4862 0.76 -0.1 5,771,036 + Psyr_4862 0.76 -0.6 5,771,036 + Psyr_4862 0.76 -0.5 5,771,036 + Psyr_4862 0.76 -0.9 5,771,036 + Psyr_4862 0.76 -0.9 5,771,037 - Psyr_4862 0.76 +0.5 5,771,037 - Psyr_4862 0.76 +0.5 5,771,037 - Psyr_4862 0.76 -0.2 5,771,037 - Psyr_4862 0.76 +0.2 5,771,037 - Psyr_4862 0.76 -0.6 5,771,037 - Psyr_4862 0.76 -0.6 5,771,037 - Psyr_4862 0.76 -0.7 5,771,079 - Psyr_4862 0.80 +1.0 5,771,079 - Psyr_4862 0.80 +0.2 5,771,096 + Psyr_4862 0.82 -1.0 5,771,096 + Psyr_4862 0.82 -0.5 5,771,268 + -0.7 5,771,299 + -0.5 5,771,299 + +0.5 5,771,299 + +1.0 5,771,299 + -1.4 5,771,299 + -0.8 5,771,300 - +0.2 5,771,300 - +0.2
Or see this region's nucleotide sequence