Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4796 and Psyr_4797 are separated by 40 nucleotides Psyr_4797 and Psyr_4798 are separated by 46 nucleotides Psyr_4798 and Psyr_4799 are separated by 114 nucleotides
Psyr_4796: Psyr_4796 - DNA ligase (NAD+), at 5,685,673 to 5,687,358
_4796
Psyr_4797: Psyr_4797 - Protein of unknown function DUF1090, at 5,687,399 to 5,687,809
_4797
Psyr_4798: Psyr_4798 - conserved hypothetical protein, at 5,687,856 to 5,688,257
_4798
Psyr_4799: Psyr_4799 - Heavy metal sensor kinase, at 5,688,372 to 5,689,763
_4799
Position (kb) 5687
5688
5689 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5687.005 kb on - strand, within Psyr_4796 at 5687.307 kb on - strand at 5687.307 kb on - strand at 5687.307 kb on - strand at 5687.352 kb on + strand at 5687.352 kb on + strand at 5687.352 kb on + strand at 5687.353 kb on - strand at 5687.353 kb on - strand at 5687.353 kb on - strand at 5687.353 kb on - strand at 5687.353 kb on - strand at 5687.381 kb on + strand at 5687.382 kb on - strand at 5687.382 kb on - strand at 5687.399 kb on - strand at 5687.458 kb on - strand, within Psyr_4797 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.968 kb on + strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5687.969 kb on - strand, within Psyr_4798 at 5688.016 kb on - strand, within Psyr_4798 at 5688.209 kb on + strand, within Psyr_4798 at 5688.210 kb on - strand, within Psyr_4798 at 5688.210 kb on - strand, within Psyr_4798 at 5688.257 kb on + strand at 5688.257 kb on + strand at 5688.257 kb on + strand at 5688.257 kb on + strand at 5688.257 kb on + strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.258 kb on - strand at 5688.269 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.318 kb on + strand at 5688.318 kb on + strand at 5688.318 kb on + strand at 5688.318 kb on + strand at 5688.319 kb on - strand at 5688.319 kb on - strand at 5688.319 kb on - strand at 5688.319 kb on - strand at 5688.373 kb on + strand at 5688.373 kb on + strand at 5688.374 kb on - strand at 5688.374 kb on - strand at 5688.384 kb on - strand at 5688.384 kb on - strand at 5688.530 kb on - strand, within Psyr_4799 at 5688.569 kb on + strand, within Psyr_4799 at 5688.597 kb on + strand, within Psyr_4799 at 5688.632 kb on + strand, within Psyr_4799 at 5688.931 kb on + strand, within Psyr_4799 at 5688.931 kb on + strand, within Psyr_4799 at 5688.931 kb on + strand, within Psyr_4799 at 5688.932 kb on - strand, within Psyr_4799 at 5688.932 kb on - strand, within Psyr_4799
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 5,687,005 - Psyr_4796 0.79 +0.1 5,687,307 - +0.9 5,687,307 - -1.1 5,687,307 - +0.8 5,687,352 + -2.2 5,687,352 + -0.7 5,687,352 + +1.2 5,687,353 - -0.4 5,687,353 - +0.9 5,687,353 - -0.1 5,687,353 - -0.8 5,687,353 - -1.4 5,687,381 + -0.6 5,687,382 - +0.9 5,687,382 - -0.5 5,687,399 - +0.6 5,687,458 - Psyr_4797 0.14 -0.9 5,687,968 + Psyr_4798 0.28 +0.2 5,687,968 + Psyr_4798 0.28 -0.7 5,687,968 + Psyr_4798 0.28 +0.7 5,687,968 + Psyr_4798 0.28 +2.6 5,687,968 + Psyr_4798 0.28 +0.6 5,687,968 + Psyr_4798 0.28 -2.1 5,687,968 + Psyr_4798 0.28 +1.5 5,687,968 + Psyr_4798 0.28 -0.1 5,687,968 + Psyr_4798 0.28 +0.8 5,687,968 + Psyr_4798 0.28 -0.3 5,687,968 + Psyr_4798 0.28 +1.4 5,687,968 + Psyr_4798 0.28 +0.6 5,687,968 + Psyr_4798 0.28 +0.1 5,687,968 + Psyr_4798 0.28 -0.4 5,687,968 + Psyr_4798 0.28 -0.3 5,687,968 + Psyr_4798 0.28 -0.1 5,687,968 + Psyr_4798 0.28 -0.3 5,687,969 - Psyr_4798 0.28 -0.4 5,687,969 - Psyr_4798 0.28 +0.6 5,687,969 - Psyr_4798 0.28 -1.0 5,687,969 - Psyr_4798 0.28 +1.2 5,687,969 - Psyr_4798 0.28 +0.2 5,687,969 - Psyr_4798 0.28 +1.1 5,687,969 - Psyr_4798 0.28 +0.6 5,687,969 - Psyr_4798 0.28 -1.3 5,687,969 - Psyr_4798 0.28 +0.4 5,688,016 - Psyr_4798 0.40 +0.5 5,688,209 + Psyr_4798 0.88 +0.6 5,688,210 - Psyr_4798 0.88 -0.1 5,688,210 - Psyr_4798 0.88 +0.6 5,688,257 + -1.1 5,688,257 + +0.9 5,688,257 + -0.4 5,688,257 + +0.2 5,688,257 + +0.8 5,688,258 - +0.2 5,688,258 - +0.7 5,688,258 - +1.0 5,688,258 - -0.4 5,688,258 - +0.7 5,688,258 - -1.1 5,688,258 - -0.1 5,688,258 - +0.3 5,688,258 - -1.2 5,688,269 + +0.3 5,688,271 + +0.7 5,688,271 + +0.6 5,688,271 + -1.1 5,688,271 + -0.4 5,688,271 + +0.1 5,688,271 + +0.0 5,688,271 + -0.4 5,688,271 + +0.3 5,688,271 + -0.5 5,688,272 - -0.5 5,688,272 - +0.9 5,688,272 - -0.7 5,688,272 - +0.9 5,688,272 - +0.1 5,688,272 - -1.0 5,688,318 + -0.2 5,688,318 + -0.3 5,688,318 + +0.6 5,688,318 + +0.4 5,688,319 - -0.1 5,688,319 - +0.6 5,688,319 - -1.6 5,688,319 - +0.5 5,688,373 + -1.3 5,688,373 + +0.5 5,688,374 - -0.0 5,688,374 - -0.5 5,688,384 - -0.2 5,688,384 - -0.0 5,688,530 - Psyr_4799 0.11 -1.5 5,688,569 + Psyr_4799 0.14 +0.3 5,688,597 + Psyr_4799 0.16 +1.2 5,688,632 + Psyr_4799 0.19 -0.2 5,688,931 + Psyr_4799 0.40 -2.4 5,688,931 + Psyr_4799 0.40 +0.2 5,688,931 + Psyr_4799 0.40 -0.6 5,688,932 - Psyr_4799 0.40 -0.1 5,688,932 - Psyr_4799 0.40 -0.0
Or see this region's nucleotide sequence