Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4359 and Psyr_4360 overlap by 1 nucleotides Psyr_4360 and Psyr_4361 are separated by 90 nucleotides Psyr_4361 and Psyr_4362 are separated by 214 nucleotides
Psyr_4359: Psyr_4359 - Lipoate-protein ligase B, at 5,212,943 to 5,213,599
_4359
Psyr_4360: Psyr_4360 - Protein of unknown function DUF493, at 5,213,599 to 5,213,874
_4360
Psyr_4361: Psyr_4361 - penicillin-binding protein 6, Serine peptidase, MEROPS family S11, at 5,213,965 to 5,215,152
_4361
Psyr_4362: Psyr_4362 - Rare lipoprotein A, at 5,215,367 to 5,216,395
_4362
Position (kb) 5213
5214
5215
5216 Strain fitness (log2 ratio) -2
-1
0
1 at 5213.881 kb on - strand at 5213.982 kb on - strand at 5214.282 kb on - strand, within Psyr_4361 at 5214.315 kb on - strand, within Psyr_4361 at 5214.401 kb on - strand, within Psyr_4361 at 5214.401 kb on - strand, within Psyr_4361 at 5214.536 kb on + strand, within Psyr_4361 at 5214.537 kb on - strand, within Psyr_4361 at 5214.546 kb on - strand, within Psyr_4361 at 5214.912 kb on - strand, within Psyr_4361 at 5214.912 kb on - strand, within Psyr_4361 at 5215.144 kb on - strand at 5215.278 kb on - strand at 5215.278 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.369 kb on - strand at 5215.386 kb on - strand at 5215.687 kb on - strand, within Psyr_4362 at 5215.687 kb on - strand, within Psyr_4362 at 5215.900 kb on - strand, within Psyr_4362 at 5215.969 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.020 kb on - strand, within Psyr_4362 at 5216.092 kb on - strand, within Psyr_4362
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 5,213,881 - -1.9 5,213,982 - +0.1 5,214,282 - Psyr_4361 0.27 -0.5 5,214,315 - Psyr_4361 0.29 -0.9 5,214,401 - Psyr_4361 0.37 -0.5 5,214,401 - Psyr_4361 0.37 +0.4 5,214,536 + Psyr_4361 0.48 -1.9 5,214,537 - Psyr_4361 0.48 -1.7 5,214,546 - Psyr_4361 0.49 +0.9 5,214,912 - Psyr_4361 0.80 +0.5 5,214,912 - Psyr_4361 0.80 -1.0 5,215,144 - -0.0 5,215,278 - -0.9 5,215,278 - +0.2 5,215,369 - +0.3 5,215,369 - -0.4 5,215,369 - +0.3 5,215,369 - +1.4 5,215,369 - -0.1 5,215,386 - -0.1 5,215,687 - Psyr_4362 0.31 -2.5 5,215,687 - Psyr_4362 0.31 -1.7 5,215,900 - Psyr_4362 0.52 +0.1 5,215,969 - Psyr_4362 0.59 -0.9 5,216,020 - Psyr_4362 0.63 -0.9 5,216,020 - -1.2 5,216,020 - Psyr_4362 0.63 +1.1 5,216,020 - Psyr_4362 0.63 -1.5 5,216,020 - Psyr_4362 0.63 -0.5 5,216,020 - Psyr_4362 0.63 +1.1 5,216,092 - Psyr_4362 0.70 -1.2
Or see this region's nucleotide sequence