Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4345 and Psyr_4346 are separated by 176 nucleotides Psyr_4346 and Psyr_4347 overlap by 8 nucleotides Psyr_4347 and Psyr_4348 are separated by 5 nucleotides
Psyr_4345: Psyr_4345 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 5,198,298 to 5,199,626
_4345
Psyr_4346: Psyr_4346 - PhoH-like protein, at 5,199,803 to 5,200,825
_4346
Psyr_4347: Psyr_4347 - Protein of unknown function UPF0054, at 5,200,818 to 5,201,318
_4347
Psyr_4348: Psyr_4348 - CBS:Transporter-associated region, at 5,201,324 to 5,202,166
_4348
Position (kb) 5199
5200
5201 Strain fitness (log2 ratio) -2
-1
0
1 at 5199.004 kb on - strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.471 kb on + strand, within Psyr_4345 at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.619 kb on + strand at 5199.619 kb on + strand at 5199.624 kb on + strand at 5199.624 kb on + strand at 5199.624 kb on + strand at 5199.625 kb on - strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5200.024 kb on + strand, within Psyr_4346 at 5200.169 kb on + strand, within Psyr_4346 at 5200.235 kb on + strand, within Psyr_4346 at 5200.235 kb on + strand, within Psyr_4346 at 5200.385 kb on + strand, within Psyr_4346 at 5200.385 kb on + strand, within Psyr_4346 at 5200.397 kb on + strand, within Psyr_4346 at 5200.418 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.489 kb on + strand, within Psyr_4346 at 5200.489 kb on + strand, within Psyr_4346 at 5200.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 5,199,004 - Psyr_4345 0.53 -1.3 5,199,153 + Psyr_4345 0.64 -0.5 5,199,153 + Psyr_4345 0.64 -0.0 5,199,153 + Psyr_4345 0.64 +1.1 5,199,153 + Psyr_4345 0.64 -0.2 5,199,153 + Psyr_4345 0.64 -0.3 5,199,153 + Psyr_4345 0.64 +0.1 5,199,154 - Psyr_4345 0.64 -0.1 5,199,154 - Psyr_4345 0.64 -0.3 5,199,154 - Psyr_4345 0.64 +0.3 5,199,154 - Psyr_4345 0.64 +0.8 5,199,154 - Psyr_4345 0.64 +0.2 5,199,154 - Psyr_4345 0.64 -0.9 5,199,154 - Psyr_4345 0.64 -0.6 5,199,471 + Psyr_4345 0.88 -0.2 5,199,574 + -0.1 5,199,574 + -0.3 5,199,574 + -0.9 5,199,574 + -0.1 5,199,574 + +0.2 5,199,574 + -0.6 5,199,574 + +0.3 5,199,574 + +0.3 5,199,574 + +1.0 5,199,575 - -1.2 5,199,575 - -0.6 5,199,575 - -1.0 5,199,575 - -0.7 5,199,575 - -1.3 5,199,575 - +0.7 5,199,575 - +1.7 5,199,575 - -0.5 5,199,575 - -1.5 5,199,575 - +0.7 5,199,575 - -1.0 5,199,619 + +0.1 5,199,619 + -0.2 5,199,624 + -0.5 5,199,624 + -1.9 5,199,624 + -0.7 5,199,625 - -0.9 5,199,766 + +0.8 5,199,766 + -0.8 5,199,766 + +0.2 5,199,766 + -2.1 5,199,766 + -0.6 5,199,766 + +0.9 5,199,766 + -0.2 5,199,766 + -0.4 5,200,024 + Psyr_4346 0.22 +0.8 5,200,169 + Psyr_4346 0.36 -0.9 5,200,235 + Psyr_4346 0.42 -0.7 5,200,235 + Psyr_4346 0.42 -2.1 5,200,385 + Psyr_4346 0.57 +0.3 5,200,385 + Psyr_4346 0.57 +0.0 5,200,397 + Psyr_4346 0.58 -1.5 5,200,418 + Psyr_4346 0.60 -1.9 5,200,469 + Psyr_4346 0.65 +1.4 5,200,469 + Psyr_4346 0.65 -0.3 5,200,469 + Psyr_4346 0.65 -1.3 5,200,469 + Psyr_4346 0.65 -1.2 5,200,469 + Psyr_4346 0.65 -1.1 5,200,469 + Psyr_4346 0.65 +1.1 5,200,469 + Psyr_4346 0.65 -1.2 5,200,489 + Psyr_4346 0.67 -2.2 5,200,489 + Psyr_4346 0.67 -0.4 5,200,725 + +0.8
Or see this region's nucleotide sequence