Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4098 and Psyr_4099 are separated by 14 nucleotides Psyr_4099 and Psyr_4100 are separated by 3 nucleotides Psyr_4100 and Psyr_4101 overlap by 4 nucleotides
Psyr_4098: Psyr_4098 - cell division protein FtsA, at 4,886,377 to 4,887,633
_4098
Psyr_4099: Psyr_4099 - Cell division protein FtsQ, at 4,887,648 to 4,888,517
_4099
Psyr_4100: Psyr_4100 - D-alanine--D-alanine ligase, at 4,888,521 to 4,889,480
_4100
Psyr_4101: Psyr_4101 - UDP-N-acetylmuramate--L-alanine ligase, at 4,889,477 to 4,890,937
_4101
Position (kb) 4888
4889
4890 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4888.514 kb on - strand at 4888.514 kb on - strand at 4888.514 kb on - strand at 4888.514 kb on - strand at 4888.602 kb on - strand at 4888.638 kb on - strand, within Psyr_4100 at 4888.638 kb on - strand, within Psyr_4100 at 4888.808 kb on - strand, within Psyr_4100 at 4888.808 kb on - strand, within Psyr_4100 at 4888.921 kb on - strand, within Psyr_4100 at 4888.924 kb on - strand, within Psyr_4100 at 4888.924 kb on - strand, within Psyr_4100 at 4888.924 kb on - strand, within Psyr_4100 at 4888.924 kb on - strand, within Psyr_4100 at 4888.924 kb on - strand, within Psyr_4100 at 4888.937 kb on - strand, within Psyr_4100 at 4888.937 kb on - strand, within Psyr_4100 at 4889.064 kb on - strand, within Psyr_4100 at 4889.064 kb on - strand, within Psyr_4100 at 4889.064 kb on - strand, within Psyr_4100 at 4889.103 kb on - strand, within Psyr_4100 at 4889.103 kb on - strand, within Psyr_4100 at 4889.184 kb on - strand, within Psyr_4100 at 4889.256 kb on - strand, within Psyr_4100 at 4889.538 kb on - strand at 4889.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 4,888,514 - -1.8 4,888,514 - -0.6 4,888,514 - -1.4 4,888,514 - -0.3 4,888,602 - +0.3 4,888,638 - Psyr_4100 0.12 -1.0 4,888,638 - Psyr_4100 0.12 +1.0 4,888,808 - Psyr_4100 0.30 -1.2 4,888,808 - Psyr_4100 0.30 +0.3 4,888,921 - Psyr_4100 0.42 +1.6 4,888,924 - Psyr_4100 0.42 -0.4 4,888,924 - Psyr_4100 0.42 -2.0 4,888,924 - Psyr_4100 0.42 -0.7 4,888,924 - Psyr_4100 0.42 -1.0 4,888,924 - Psyr_4100 0.42 -1.0 4,888,937 - Psyr_4100 0.43 -1.8 4,888,937 - Psyr_4100 0.43 -0.7 4,889,064 - Psyr_4100 0.57 -0.8 4,889,064 - Psyr_4100 0.57 -1.8 4,889,064 - Psyr_4100 0.57 -0.8 4,889,103 - Psyr_4100 0.61 -3.1 4,889,103 - Psyr_4100 0.61 +0.9 4,889,184 - Psyr_4100 0.69 -1.0 4,889,256 - Psyr_4100 0.77 -0.3 4,889,538 - -0.5 4,889,538 - +0.0
Or see this region's nucleotide sequence