Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4089 and Psyr_4090 are separated by 15 nucleotides Psyr_4090 and Psyr_4091 are separated by 261 nucleotides
Psyr_4089: Psyr_4089 - PAS, at 4,874,589 to 4,876,625
_4089
Psyr_4090: Psyr_4090 - ATP:cob(I)alamin adenosyltransferase, at 4,876,641 to 4,877,219
_4090
Psyr_4091: Psyr_4091 - 8-oxo-dGTPase, at 4,877,481 to 4,878,431
_4091
Position (kb) 4876
4877
4878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4875.702 kb on + strand, within Psyr_4089 at 4875.782 kb on - strand, within Psyr_4089 at 4875.892 kb on + strand, within Psyr_4089 at 4875.892 kb on + strand, within Psyr_4089 at 4875.893 kb on - strand, within Psyr_4089 at 4875.893 kb on - strand, within Psyr_4089 at 4875.901 kb on + strand, within Psyr_4089 at 4875.901 kb on + strand, within Psyr_4089 at 4875.901 kb on + strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4876.528 kb on + strand at 4876.528 kb on + strand at 4876.529 kb on - strand at 4876.665 kb on + strand at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4877.040 kb on - strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.279 kb on + strand at 4877.283 kb on + strand at 4877.283 kb on + strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.356 kb on - strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.427 kb on + strand at 4877.428 kb on - strand at 4877.428 kb on - strand at 4877.431 kb on + strand at 4877.431 kb on + strand at 4877.432 kb on - strand at 4877.432 kb on - strand at 4877.788 kb on + strand, within Psyr_4091 at 4877.788 kb on + strand, within Psyr_4091 at 4877.788 kb on + strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.789 kb on - strand, within Psyr_4091 at 4877.920 kb on + strand, within Psyr_4091 at 4877.921 kb on - strand, within Psyr_4091 at 4877.933 kb on - strand, within Psyr_4091 at 4878.037 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.094 kb on + strand, within Psyr_4091 at 4878.095 kb on - strand, within Psyr_4091 at 4878.095 kb on - strand, within Psyr_4091
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 4,875,702 + Psyr_4089 0.55 -0.6 4,875,782 - Psyr_4089 0.59 +2.6 4,875,892 + Psyr_4089 0.64 +2.0 4,875,892 + Psyr_4089 0.64 -1.0 4,875,893 - Psyr_4089 0.64 +1.6 4,875,893 - Psyr_4089 0.64 +0.4 4,875,901 + Psyr_4089 0.64 +1.6 4,875,901 + Psyr_4089 0.64 -1.0 4,875,901 + Psyr_4089 0.64 -0.6 4,875,902 - Psyr_4089 0.64 -0.3 4,875,902 - Psyr_4089 0.64 -0.5 4,875,902 - Psyr_4089 0.64 +0.2 4,875,902 - Psyr_4089 0.64 +0.6 4,875,902 - Psyr_4089 0.64 +2.0 4,876,528 + -0.6 4,876,528 + -1.8 4,876,529 - +0.8 4,876,665 + -2.1 4,876,846 + Psyr_4090 0.35 -1.4 4,876,846 + Psyr_4090 0.35 +0.6 4,876,846 + Psyr_4090 0.35 -0.8 4,876,846 + Psyr_4090 0.35 +0.1 4,876,847 - Psyr_4090 0.36 -2.0 4,876,847 - Psyr_4090 0.36 +0.2 4,876,847 - Psyr_4090 0.36 -1.8 4,876,905 + Psyr_4090 0.46 +0.0 4,876,905 + Psyr_4090 0.46 +1.6 4,876,905 + Psyr_4090 0.46 +0.0 4,876,906 - Psyr_4090 0.46 +0.0 4,876,906 - Psyr_4090 0.46 +1.2 4,877,040 - Psyr_4090 0.69 -1.1 4,877,115 + Psyr_4090 0.82 +0.4 4,877,115 + Psyr_4090 0.82 +0.7 4,877,115 + Psyr_4090 0.82 +0.9 4,877,115 + Psyr_4090 0.82 -0.3 4,877,116 - Psyr_4090 0.82 +2.1 4,877,116 - Psyr_4090 0.82 +2.0 4,877,116 - Psyr_4090 0.82 +1.0 4,877,116 - Psyr_4090 0.82 +0.4 4,877,116 - Psyr_4090 0.82 -0.1 4,877,226 + -0.8 4,877,226 + -0.2 4,877,226 + +0.1 4,877,226 + -0.1 4,877,226 + +1.0 4,877,227 - +0.8 4,877,227 - -2.2 4,877,227 - +0.1 4,877,279 + +1.4 4,877,283 + -1.2 4,877,283 + +0.3 4,877,284 - -1.0 4,877,284 - -0.3 4,877,284 - -2.3 4,877,285 + -0.6 4,877,285 + +1.0 4,877,285 + +0.7 4,877,285 + -0.4 4,877,285 + +0.3 4,877,285 + +1.3 4,877,285 + +0.5 4,877,285 + +1.4 4,877,285 + +0.2 4,877,285 + +0.3 4,877,285 + -0.5 4,877,285 + +0.6 4,877,285 + +1.4 4,877,285 + +1.6 4,877,286 - -1.0 4,877,286 - +0.9 4,877,286 - +3.0 4,877,286 - +2.6 4,877,286 - -0.5 4,877,286 - +0.5 4,877,286 - +0.7 4,877,286 - +0.4 4,877,286 - +1.6 4,877,286 - +0.2 4,877,286 - -0.7 4,877,286 - +1.0 4,877,286 - -0.4 4,877,356 - +1.1 4,877,419 + +0.0 4,877,419 + +1.4 4,877,419 + +0.5 4,877,419 + -0.3 4,877,419 + -2.1 4,877,419 + +0.1 4,877,419 + +0.2 4,877,419 + +0.9 4,877,419 + +1.3 4,877,419 + +0.9 4,877,419 + -1.1 4,877,419 + +1.0 4,877,420 - -1.6 4,877,420 - +0.2 4,877,420 - -0.6 4,877,420 - +0.3 4,877,420 - -1.1 4,877,427 + +0.4 4,877,428 - +0.2 4,877,428 - +0.0 4,877,431 + -1.0 4,877,431 + +0.0 4,877,432 - -0.3 4,877,432 - -0.4 4,877,788 + Psyr_4091 0.32 -3.0 4,877,788 + Psyr_4091 0.32 -2.0 4,877,788 + Psyr_4091 0.32 -1.8 4,877,789 - Psyr_4091 0.32 -1.0 4,877,789 - Psyr_4091 0.32 +0.0 4,877,789 - Psyr_4091 0.32 -0.2 4,877,920 + Psyr_4091 0.46 -1.4 4,877,921 - Psyr_4091 0.46 -2.0 4,877,933 - Psyr_4091 0.48 -1.6 4,878,037 + Psyr_4091 0.58 +0.3 4,878,094 + Psyr_4091 0.64 -1.7 4,878,094 + Psyr_4091 0.64 -1.3 4,878,094 + Psyr_4091 0.64 -1.0 4,878,094 + Psyr_4091 0.64 -1.3 4,878,094 + Psyr_4091 0.64 -2.0 4,878,095 - Psyr_4091 0.65 -0.1 4,878,095 - Psyr_4091 0.65 +0.5
Or see this region's nucleotide sequence