Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4064 and Psyr_4065 are separated by 16 nucleotides Psyr_4065 and Psyr_4066 are separated by 20 nucleotides Psyr_4066 and Psyr_4067 overlap by 4 nucleotides Psyr_4067 and Psyr_4068 are separated by 4 nucleotides
Psyr_4064: Psyr_4064 - lipoprotein, putative, at 4,848,524 to 4,849,588
_4064
Psyr_4065: Psyr_4065 - Protein of unknown function DUF1513, at 4,849,605 to 4,850,711
_4065
Psyr_4066: Psyr_4066 - conserved hypothetical protein, at 4,850,732 to 4,850,959
_4066
Psyr_4067: Psyr_4067 - Lipopolysaccharide kinase, at 4,850,956 to 4,851,678
_4067
Psyr_4068: Psyr_4068 - conserved hypothetical protein, at 4,851,683 to 4,852,363
_4068
Position (kb) 4849
4850
4851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4848.644 kb on + strand, within Psyr_4064 at 4848.644 kb on + strand, within Psyr_4064 at 4848.644 kb on + strand, within Psyr_4064 at 4848.644 kb on + strand, within Psyr_4064 at 4848.645 kb on - strand, within Psyr_4064 at 4848.645 kb on - strand, within Psyr_4064 at 4848.819 kb on + strand, within Psyr_4064 at 4848.819 kb on + strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.944 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.741 kb on - strand, within Psyr_4065 at 4849.774 kb on + strand, within Psyr_4065 at 4849.862 kb on + strand, within Psyr_4065 at 4849.862 kb on + strand, within Psyr_4065 at 4849.863 kb on - strand, within Psyr_4065 at 4849.872 kb on + strand, within Psyr_4065 at 4849.872 kb on + strand, within Psyr_4065 at 4849.872 kb on + strand, within Psyr_4065 at 4849.873 kb on - strand, within Psyr_4065 at 4849.938 kb on + strand, within Psyr_4065 at 4849.939 kb on - strand, within Psyr_4065 at 4849.939 kb on - strand, within Psyr_4065 at 4849.978 kb on - strand, within Psyr_4065 at 4850.017 kb on + strand, within Psyr_4065 at 4850.269 kb on + strand, within Psyr_4065 at 4850.427 kb on + strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.446 kb on + strand, within Psyr_4065 at 4850.447 kb on - strand, within Psyr_4065 at 4850.619 kb on + strand at 4850.619 kb on + strand at 4850.619 kb on + strand at 4850.619 kb on + strand at 4850.619 kb on + strand at 4850.619 kb on + strand at 4850.619 kb on + strand at 4850.620 kb on - strand at 4850.620 kb on - strand at 4850.620 kb on - strand at 4850.620 kb on - strand at 4850.620 kb on - strand at 4850.620 kb on - strand at 4850.709 kb on + strand at 4850.713 kb on + strand at 4850.713 kb on + strand at 4850.713 kb on + strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.714 kb on - strand at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.766 kb on + strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.767 kb on - strand, within Psyr_4066 at 4850.929 kb on + strand, within Psyr_4066 at 4850.952 kb on - strand at 4850.977 kb on - strand at 4850.977 kb on - strand at 4851.005 kb on + strand at 4851.005 kb on + strand at 4851.063 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.185 kb on + strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.186 kb on - strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.260 kb on + strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.261 kb on - strand, within Psyr_4067 at 4851.454 kb on + strand, within Psyr_4067 at 4851.455 kb on - strand, within Psyr_4067 at 4851.455 kb on - strand, within Psyr_4067 at 4851.492 kb on - strand, within Psyr_4067 at 4851.492 kb on - strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.495 kb on + strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.496 kb on - strand, within Psyr_4067 at 4851.518 kb on + strand, within Psyr_4067 at 4851.518 kb on + strand, within Psyr_4067 at 4851.684 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.696 kb on - strand at 4851.696 kb on - strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 4,848,644 + Psyr_4064 0.11 -0.8 4,848,644 + Psyr_4064 0.11 +0.0 4,848,644 + Psyr_4064 0.11 +0.0 4,848,644 + Psyr_4064 0.11 -1.0 4,848,645 - Psyr_4064 0.11 -0.2 4,848,645 - Psyr_4064 0.11 +0.0 4,848,819 + Psyr_4064 0.28 -2.0 4,848,819 + Psyr_4064 0.28 +0.3 4,848,820 - Psyr_4064 0.28 -2.4 4,848,820 - Psyr_4064 0.28 -0.3 4,848,820 - Psyr_4064 0.28 +0.6 4,848,820 - Psyr_4064 0.28 -1.1 4,848,944 + Psyr_4064 0.39 +0.5 4,848,950 + Psyr_4064 0.40 +0.5 4,848,950 + Psyr_4064 0.40 +0.2 4,848,950 + Psyr_4064 0.40 +0.3 4,848,950 + Psyr_4064 0.40 +0.0 4,848,950 + Psyr_4064 0.40 +0.2 4,848,950 + Psyr_4064 0.40 -0.4 4,848,950 + Psyr_4064 0.40 -0.6 4,848,950 + Psyr_4064 0.40 -0.6 4,848,950 + Psyr_4064 0.40 +1.0 4,848,950 + Psyr_4064 0.40 -1.1 4,848,950 + Psyr_4064 0.40 -1.1 4,848,950 + Psyr_4064 0.40 -1.6 4,848,951 - Psyr_4064 0.40 -0.8 4,848,951 - Psyr_4064 0.40 +0.6 4,848,951 - Psyr_4064 0.40 -0.9 4,848,951 - Psyr_4064 0.40 -1.1 4,848,951 - Psyr_4064 0.40 -0.6 4,848,951 - Psyr_4064 0.40 -0.3 4,848,951 - Psyr_4064 0.40 -0.5 4,848,951 - Psyr_4064 0.40 +0.2 4,848,951 - Psyr_4064 0.40 +0.2 4,848,951 - Psyr_4064 0.40 +0.6 4,848,951 - Psyr_4064 0.40 -0.4 4,848,951 - Psyr_4064 0.40 +0.0 4,848,951 - Psyr_4064 0.40 +0.5 4,849,597 + -1.2 4,849,597 + -0.0 4,849,597 + -0.6 4,849,597 + -0.2 4,849,597 + +0.6 4,849,597 + -0.9 4,849,597 + +0.4 4,849,598 - +1.3 4,849,598 - -1.3 4,849,598 - +1.1 4,849,598 - +1.8 4,849,598 - -0.3 4,849,598 - +0.7 4,849,598 - +0.7 4,849,598 - +0.0 4,849,598 - -1.1 4,849,598 - -0.3 4,849,598 - -3.1 4,849,741 - Psyr_4065 0.12 +0.5 4,849,774 + Psyr_4065 0.15 -0.6 4,849,862 + Psyr_4065 0.23 +0.4 4,849,862 + Psyr_4065 0.23 +1.7 4,849,863 - Psyr_4065 0.23 -0.4 4,849,872 + Psyr_4065 0.24 -0.7 4,849,872 + Psyr_4065 0.24 +1.3 4,849,872 + Psyr_4065 0.24 -2.9 4,849,873 - Psyr_4065 0.24 +0.1 4,849,938 + Psyr_4065 0.30 +0.4 4,849,939 - Psyr_4065 0.30 -0.2 4,849,939 - Psyr_4065 0.30 -2.6 4,849,978 - Psyr_4065 0.34 +1.0 4,850,017 + Psyr_4065 0.37 +1.3 4,850,269 + Psyr_4065 0.60 +0.4 4,850,427 + Psyr_4065 0.74 -0.8 4,850,428 - Psyr_4065 0.74 +0.2 4,850,428 - Psyr_4065 0.74 +1.3 4,850,428 - Psyr_4065 0.74 +0.5 4,850,428 - Psyr_4065 0.74 +0.6 4,850,446 + Psyr_4065 0.76 +0.1 4,850,447 - Psyr_4065 0.76 +0.2 4,850,619 + -1.1 4,850,619 + -1.0 4,850,619 + -0.4 4,850,619 + +0.9 4,850,619 + -0.7 4,850,619 + -0.1 4,850,619 + -0.1 4,850,620 - +0.4 4,850,620 - +0.1 4,850,620 - -0.9 4,850,620 - +0.7 4,850,620 - -0.1 4,850,620 - -0.3 4,850,709 + -0.4 4,850,713 + -1.2 4,850,713 + +1.4 4,850,713 + -0.3 4,850,714 - +0.6 4,850,714 - -0.6 4,850,714 - -0.1 4,850,714 - +0.6 4,850,766 + Psyr_4066 0.15 -0.1 4,850,766 + Psyr_4066 0.15 -2.2 4,850,766 + Psyr_4066 0.15 -0.6 4,850,766 + Psyr_4066 0.15 -2.4 4,850,766 + -0.6 4,850,766 + Psyr_4066 0.15 +0.6 4,850,766 + Psyr_4066 0.15 -0.7 4,850,766 + Psyr_4066 0.15 +0.5 4,850,767 - Psyr_4066 0.15 +0.6 4,850,767 - Psyr_4066 0.15 +0.7 4,850,767 - Psyr_4066 0.15 -0.2 4,850,929 + Psyr_4066 0.86 +1.4 4,850,952 - -0.7 4,850,977 - -1.0 4,850,977 - -0.6 4,851,005 + -1.0 4,851,005 + +0.0 4,851,063 + Psyr_4067 0.15 -1.8 4,851,185 + Psyr_4067 0.32 -0.9 4,851,185 + Psyr_4067 0.32 +0.0 4,851,185 + Psyr_4067 0.32 -0.1 4,851,185 + Psyr_4067 0.32 +0.0 4,851,185 + Psyr_4067 0.32 +0.4 4,851,185 + Psyr_4067 0.32 +1.2 4,851,185 + Psyr_4067 0.32 +0.2 4,851,185 + Psyr_4067 0.32 -1.1 4,851,185 + Psyr_4067 0.32 +0.2 4,851,185 + Psyr_4067 0.32 +0.0 4,851,185 + Psyr_4067 0.32 -1.0 4,851,186 - Psyr_4067 0.32 +1.5 4,851,186 - Psyr_4067 0.32 +0.8 4,851,186 - Psyr_4067 0.32 -3.0 4,851,186 - Psyr_4067 0.32 -0.4 4,851,260 + Psyr_4067 0.42 -1.2 4,851,260 + Psyr_4067 0.42 -0.3 4,851,260 + Psyr_4067 0.42 -0.3 4,851,261 - Psyr_4067 0.42 -0.6 4,851,261 - Psyr_4067 0.42 -1.2 4,851,261 - Psyr_4067 0.42 -0.2 4,851,261 - Psyr_4067 0.42 -2.0 4,851,454 + Psyr_4067 0.69 -1.0 4,851,455 - Psyr_4067 0.69 -0.9 4,851,455 - Psyr_4067 0.69 -1.9 4,851,492 - Psyr_4067 0.74 -0.7 4,851,492 - Psyr_4067 0.74 +0.6 4,851,495 + Psyr_4067 0.75 -1.2 4,851,495 + Psyr_4067 0.75 -1.1 4,851,495 + Psyr_4067 0.75 -0.6 4,851,495 + Psyr_4067 0.75 +0.0 4,851,496 - Psyr_4067 0.75 -0.9 4,851,496 - Psyr_4067 0.75 +0.3 4,851,496 - Psyr_4067 0.75 -0.7 4,851,496 - Psyr_4067 0.75 -0.5 4,851,496 - Psyr_4067 0.75 -1.1 4,851,496 - Psyr_4067 0.75 +0.3 4,851,518 + Psyr_4067 0.78 +0.0 4,851,518 + Psyr_4067 0.78 -0.9 4,851,684 + -1.0 4,851,691 + -0.8 4,851,691 + +0.3 4,851,691 + +0.2 4,851,691 + +0.3 4,851,691 + -0.6 4,851,691 + -0.7 4,851,692 - +0.3 4,851,692 - -1.6 4,851,692 - -0.4 4,851,692 - -0.6 4,851,696 - -2.1 4,851,696 - -0.7 4,851,702 + -0.2 4,851,702 + -0.2 4,851,702 + +0.4 4,851,702 + +0.9 4,851,702 + +0.4 4,851,702 + +1.0 4,851,702 + -0.7 4,851,702 + +0.3 4,851,702 + +0.4 4,851,702 + -0.4 4,851,702 + -0.5 4,851,702 + -2.0 4,851,702 + +0.7 4,851,703 - +0.8 4,851,703 - -2.5 4,851,703 - -0.2 4,851,703 - -1.1 4,851,703 - +1.6 4,851,703 - +0.4 4,851,703 - +1.0 4,851,703 - +0.0 4,851,703 - +0.0 4,851,703 - +1.0 4,851,703 - -1.3 4,851,703 - +0.2 4,851,703 - +1.0
Or see this region's nucleotide sequence