Experiment: KB with Erythromycin 25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4056 and Psyr_4057 are separated by 74 nucleotides Psyr_4057 and Psyr_4058 are separated by 95 nucleotides Psyr_4058 and Psyr_4059 are separated by 191 nucleotides
Psyr_4056: Psyr_4056 - dehydrogenase, putative, at 4,838,599 to 4,839,591
_4056
Psyr_4057: Psyr_4057 - regulatory protein, LysR:LysR, substrate-binding protein, at 4,839,666 to 4,840,565
_4057
Psyr_4058: Psyr_4058 - Lysine exporter protein (LYSE/YGGA), at 4,840,661 to 4,841,263
_4058
Psyr_4059: Psyr_4059 - Superoxide dismutase, at 4,841,455 to 4,842,036
_4059
Position (kb) 4839
4840
4841 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4838.681 kb on + strand at 4838.681 kb on + strand at 4838.682 kb on - strand at 4838.700 kb on + strand, within Psyr_4056 at 4838.751 kb on + strand, within Psyr_4056 at 4838.751 kb on + strand, within Psyr_4056 at 4838.752 kb on - strand, within Psyr_4056 at 4838.752 kb on - strand, within Psyr_4056 at 4838.752 kb on - strand, within Psyr_4056 at 4838.752 kb on - strand, within Psyr_4056 at 4838.752 kb on - strand, within Psyr_4056 at 4838.752 kb on - strand, within Psyr_4056 at 4838.810 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand, within Psyr_4056 at 4838.870 kb on + strand at 4838.870 kb on + strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.871 kb on - strand, within Psyr_4056 at 4838.918 kb on + strand, within Psyr_4056 at 4838.918 kb on + strand, within Psyr_4056 at 4838.918 kb on + strand, within Psyr_4056 at 4838.918 kb on + strand, within Psyr_4056 at 4838.918 kb on + strand, within Psyr_4056 at 4838.918 kb on + strand, within Psyr_4056 at 4838.919 kb on - strand, within Psyr_4056 at 4838.919 kb on - strand, within Psyr_4056 at 4838.919 kb on - strand, within Psyr_4056 at 4838.919 kb on - strand, within Psyr_4056 at 4839.020 kb on - strand, within Psyr_4056 at 4839.020 kb on - strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.069 kb on + strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.070 kb on - strand, within Psyr_4056 at 4839.164 kb on + strand, within Psyr_4056 at 4839.164 kb on + strand, within Psyr_4056 at 4839.164 kb on + strand, within Psyr_4056 at 4839.165 kb on - strand, within Psyr_4056 at 4839.165 kb on - strand, within Psyr_4056 at 4839.165 kb on - strand, within Psyr_4056 at 4839.165 kb on - strand, within Psyr_4056 at 4839.165 kb on - strand, within Psyr_4056 at 4839.179 kb on + strand, within Psyr_4056 at 4839.245 kb on + strand, within Psyr_4056 at 4839.245 kb on + strand, within Psyr_4056 at 4839.245 kb on + strand, within Psyr_4056 at 4839.246 kb on - strand, within Psyr_4056 at 4839.594 kb on - strand at 4839.645 kb on + strand at 4839.645 kb on + strand at 4839.645 kb on + strand at 4839.645 kb on + strand at 4839.658 kb on - strand at 4839.766 kb on + strand, within Psyr_4057 at 4839.766 kb on + strand, within Psyr_4057 at 4839.766 kb on + strand, within Psyr_4057 at 4839.782 kb on + strand, within Psyr_4057 at 4839.783 kb on - strand, within Psyr_4057 at 4839.783 kb on - strand, within Psyr_4057 at 4839.882 kb on - strand, within Psyr_4057 at 4839.953 kb on - strand, within Psyr_4057 at 4840.555 kb on + strand at 4840.605 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.674 kb on - strand at 4840.674 kb on - strand at 4840.674 kb on - strand at 4840.674 kb on - strand at 4840.792 kb on + strand, within Psyr_4058 at 4840.793 kb on - strand, within Psyr_4058 at 4840.893 kb on + strand, within Psyr_4058 at 4840.894 kb on - strand, within Psyr_4058 at 4840.894 kb on - strand, within Psyr_4058 at 4840.894 kb on - strand, within Psyr_4058 at 4840.907 kb on + strand, within Psyr_4058 at 4841.036 kb on + strand, within Psyr_4058 at 4841.036 kb on + strand, within Psyr_4058 at 4841.036 kb on + strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.049 kb on + strand, within Psyr_4058 at 4841.049 kb on + strand, within Psyr_4058 at 4841.049 kb on + strand, within Psyr_4058 at 4841.052 kb on + strand, within Psyr_4058 at 4841.052 kb on + strand, within Psyr_4058 at 4841.053 kb on - strand, within Psyr_4058 at 4841.053 kb on - strand, within Psyr_4058 at 4841.053 kb on - strand, within Psyr_4058 at 4841.096 kb on + strand, within Psyr_4058 at 4841.097 kb on - strand, within Psyr_4058 at 4841.097 kb on - strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.346 kb on - strand at 4841.346 kb on - strand at 4841.346 kb on - strand at 4841.347 kb on + strand at 4841.347 kb on + strand at 4841.347 kb on + strand at 4841.374 kb on + strand at 4841.374 kb on + strand at 4841.395 kb on + strand at 4841.395 kb on + strand at 4841.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml remove 4,838,681 + -0.3 4,838,681 + +0.3 4,838,682 - -0.2 4,838,700 + Psyr_4056 0.10 +0.2 4,838,751 + Psyr_4056 0.15 +0.5 4,838,751 + Psyr_4056 0.15 +0.2 4,838,752 - Psyr_4056 0.15 -2.0 4,838,752 - Psyr_4056 0.15 -2.0 4,838,752 - Psyr_4056 0.15 +1.8 4,838,752 - Psyr_4056 0.15 +0.1 4,838,752 - Psyr_4056 0.15 +0.4 4,838,752 - Psyr_4056 0.15 -1.4 4,838,810 + Psyr_4056 0.21 +0.5 4,838,870 + Psyr_4056 0.27 -0.4 4,838,870 + Psyr_4056 0.27 +0.4 4,838,870 + Psyr_4056 0.27 -0.5 4,838,870 + Psyr_4056 0.27 -0.1 4,838,870 + Psyr_4056 0.27 +0.4 4,838,870 + Psyr_4056 0.27 -0.6 4,838,870 + -0.3 4,838,870 + Psyr_4056 0.27 +1.3 4,838,871 - Psyr_4056 0.27 +0.5 4,838,871 - Psyr_4056 0.27 +0.9 4,838,871 - Psyr_4056 0.27 +1.0 4,838,871 - Psyr_4056 0.27 -0.4 4,838,871 - Psyr_4056 0.27 -1.4 4,838,871 - Psyr_4056 0.27 -1.4 4,838,871 - Psyr_4056 0.27 +0.0 4,838,871 - Psyr_4056 0.27 +0.3 4,838,918 + Psyr_4056 0.32 +0.2 4,838,918 + Psyr_4056 0.32 -0.1 4,838,918 + Psyr_4056 0.32 +0.7 4,838,918 + Psyr_4056 0.32 +0.9 4,838,918 + Psyr_4056 0.32 +0.7 4,838,918 + Psyr_4056 0.32 +2.6 4,838,919 - Psyr_4056 0.32 -0.9 4,838,919 - Psyr_4056 0.32 -0.6 4,838,919 - Psyr_4056 0.32 +0.0 4,838,919 - Psyr_4056 0.32 +1.0 4,839,020 - Psyr_4056 0.42 -0.3 4,839,020 - Psyr_4056 0.42 +1.9 4,839,069 + Psyr_4056 0.47 -0.0 4,839,069 + Psyr_4056 0.47 +0.2 4,839,069 + Psyr_4056 0.47 +0.3 4,839,069 + Psyr_4056 0.47 +0.1 4,839,069 + Psyr_4056 0.47 +1.0 4,839,069 + Psyr_4056 0.47 -0.3 4,839,069 + Psyr_4056 0.47 +1.0 4,839,069 + Psyr_4056 0.47 +0.0 4,839,069 + Psyr_4056 0.47 +1.0 4,839,069 + Psyr_4056 0.47 +1.2 4,839,069 + Psyr_4056 0.47 +0.5 4,839,070 - Psyr_4056 0.47 +0.0 4,839,070 - Psyr_4056 0.47 +0.3 4,839,070 - Psyr_4056 0.47 +0.1 4,839,070 - Psyr_4056 0.47 -0.2 4,839,070 - Psyr_4056 0.47 +0.8 4,839,070 - Psyr_4056 0.47 -0.9 4,839,070 - Psyr_4056 0.47 +0.5 4,839,164 + Psyr_4056 0.57 -1.1 4,839,164 + Psyr_4056 0.57 +1.4 4,839,164 + Psyr_4056 0.57 +0.1 4,839,165 - Psyr_4056 0.57 +0.5 4,839,165 - Psyr_4056 0.57 -0.1 4,839,165 - Psyr_4056 0.57 -0.2 4,839,165 - Psyr_4056 0.57 -0.4 4,839,165 - Psyr_4056 0.57 +0.0 4,839,179 + Psyr_4056 0.58 +1.0 4,839,245 + Psyr_4056 0.65 -0.1 4,839,245 + Psyr_4056 0.65 +1.1 4,839,245 + Psyr_4056 0.65 -1.0 4,839,246 - Psyr_4056 0.65 -0.7 4,839,594 - -0.7 4,839,645 + -0.7 4,839,645 + +0.3 4,839,645 + -1.2 4,839,645 + +0.4 4,839,658 - +0.1 4,839,766 + Psyr_4057 0.11 -0.6 4,839,766 + Psyr_4057 0.11 +0.0 4,839,766 + Psyr_4057 0.11 -1.2 4,839,782 + Psyr_4057 0.13 -1.0 4,839,783 - Psyr_4057 0.13 +1.0 4,839,783 - Psyr_4057 0.13 +0.0 4,839,882 - Psyr_4057 0.24 -2.0 4,839,953 - Psyr_4057 0.32 +0.6 4,840,555 + -0.0 4,840,605 + -0.1 4,840,656 + +2.8 4,840,656 + -1.3 4,840,656 + -1.1 4,840,656 + +0.2 4,840,656 + +1.0 4,840,656 + -1.8 4,840,656 + -0.1 4,840,656 + +1.1 4,840,656 + -0.2 4,840,656 + -0.6 4,840,656 + +0.4 4,840,656 + +0.7 4,840,656 + +0.7 4,840,657 - -0.8 4,840,657 - -0.2 4,840,657 - -0.9 4,840,657 - +1.0 4,840,657 - +0.2 4,840,657 - +0.5 4,840,657 - -1.0 4,840,657 - +1.0 4,840,657 - -0.1 4,840,657 - +0.6 4,840,657 - -0.3 4,840,657 - -1.2 4,840,657 - +0.0 4,840,660 + +1.2 4,840,660 + +1.0 4,840,660 + -1.4 4,840,660 + -0.6 4,840,660 + +0.1 4,840,660 + -0.4 4,840,660 + -0.4 4,840,660 + -2.6 4,840,660 + -1.0 4,840,660 + +0.0 4,840,660 + -0.8 4,840,660 + +0.0 4,840,660 + -0.8 4,840,661 - +0.8 4,840,661 - -0.4 4,840,661 - +0.2 4,840,661 - -0.6 4,840,661 - -0.6 4,840,661 - +0.9 4,840,661 - +0.9 4,840,661 - +0.7 4,840,661 - +0.1 4,840,661 - +0.0 4,840,674 - +0.3 4,840,674 - +0.6 4,840,674 - -0.6 4,840,674 - +1.5 4,840,792 + Psyr_4058 0.22 -1.3 4,840,793 - Psyr_4058 0.22 -0.7 4,840,893 + Psyr_4058 0.38 -1.4 4,840,894 - Psyr_4058 0.39 -0.2 4,840,894 - Psyr_4058 0.39 +0.4 4,840,894 - Psyr_4058 0.39 +0.0 4,840,907 + Psyr_4058 0.41 +0.0 4,841,036 + Psyr_4058 0.62 +0.0 4,841,036 + Psyr_4058 0.62 -0.2 4,841,036 + Psyr_4058 0.62 -0.3 4,841,037 - Psyr_4058 0.62 +0.4 4,841,037 - Psyr_4058 0.62 -0.8 4,841,037 - Psyr_4058 0.62 +0.0 4,841,037 - Psyr_4058 0.62 +0.9 4,841,037 - Psyr_4058 0.62 -0.6 4,841,037 - Psyr_4058 0.62 +0.0 4,841,037 - Psyr_4058 0.62 -0.5 4,841,037 - Psyr_4058 0.62 +2.0 4,841,049 + Psyr_4058 0.64 +2.0 4,841,049 + Psyr_4058 0.64 -0.2 4,841,049 + Psyr_4058 0.64 -0.6 4,841,052 + Psyr_4058 0.65 +1.4 4,841,052 + Psyr_4058 0.65 -0.2 4,841,053 - Psyr_4058 0.65 +0.4 4,841,053 - Psyr_4058 0.65 -2.2 4,841,053 - Psyr_4058 0.65 +0.3 4,841,096 + Psyr_4058 0.72 -0.2 4,841,097 - Psyr_4058 0.72 -0.3 4,841,097 - Psyr_4058 0.72 -1.1 4,841,100 + Psyr_4058 0.73 -0.1 4,841,100 + Psyr_4058 0.73 -0.6 4,841,100 + Psyr_4058 0.73 +0.0 4,841,100 + Psyr_4058 0.73 -0.1 4,841,100 + Psyr_4058 0.73 +0.2 4,841,101 - Psyr_4058 0.73 -1.6 4,841,101 - Psyr_4058 0.73 +1.0 4,841,101 - Psyr_4058 0.73 -0.3 4,841,101 - Psyr_4058 0.73 +0.7 4,841,101 - Psyr_4058 0.73 -0.6 4,841,101 - Psyr_4058 0.73 +0.9 4,841,101 - Psyr_4058 0.73 -0.9 4,841,345 + +1.2 4,841,345 + +0.4 4,841,345 + +1.0 4,841,345 + +0.3 4,841,345 + -0.6 4,841,345 + +1.0 4,841,346 - +1.3 4,841,346 - +1.9 4,841,346 - -2.0 4,841,347 + +1.0 4,841,347 + -0.4 4,841,347 + +0.4 4,841,374 + -0.7 4,841,374 + +0.7 4,841,395 + -0.1 4,841,395 + +0.0 4,841,396 - +0.3
Or see this region's nucleotide sequence