Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4056

Experiment: KB with Erythromycin 25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4055 and Psyr_4056 are separated by 98 nucleotidesPsyr_4056 and Psyr_4057 are separated by 74 nucleotides Psyr_4055: Psyr_4055 - conserved domain protein, at 4,837,649 to 4,838,500 _4055 Psyr_4056: Psyr_4056 - dehydrogenase, putative, at 4,838,599 to 4,839,591 _4056 Psyr_4057: Psyr_4057 - regulatory protein, LysR:LysR, substrate-binding protein, at 4,839,666 to 4,840,565 _4057 Position (kb) 4838 4839 4840Strain fitness (log2 ratio) -2 -1 0 1 2at 4837.696 kb on + strandat 4837.696 kb on + strandat 4837.696 kb on + strandat 4837.712 kb on - strandat 4837.750 kb on + strand, within Psyr_4055at 4837.750 kb on + strand, within Psyr_4055at 4838.191 kb on + strand, within Psyr_4055at 4838.191 kb on + strand, within Psyr_4055at 4838.191 kb on + strand, within Psyr_4055at 4838.192 kb on - strand, within Psyr_4055at 4838.505 kb on - strandat 4838.523 kb on + strandat 4838.523 kb on + strandat 4838.524 kb on - strandat 4838.524 kb on - strandat 4838.537 kb on + strandat 4838.537 kb on + strandat 4838.555 kb on + strandat 4838.555 kb on + strandat 4838.555 kb on + strandat 4838.556 kb on - strandat 4838.556 kb on - strandat 4838.556 kb on - strandat 4838.556 kb on - strandat 4838.556 kb on - strandat 4838.556 kb on - strandat 4838.557 kb on + strandat 4838.558 kb on - strandat 4838.558 kb on - strandat 4838.558 kb on - strandat 4838.558 kb on - strandat 4838.558 kb on - strandat 4838.681 kb on + strandat 4838.681 kb on + strandat 4838.682 kb on - strandat 4838.700 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.810 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strandat 4838.870 kb on + strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.919 kb on - strand, within Psyr_4056at 4838.919 kb on - strand, within Psyr_4056at 4838.919 kb on - strand, within Psyr_4056at 4838.919 kb on - strand, within Psyr_4056at 4839.020 kb on - strand, within Psyr_4056at 4839.020 kb on - strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.164 kb on + strand, within Psyr_4056at 4839.164 kb on + strand, within Psyr_4056at 4839.164 kb on + strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.179 kb on + strand, within Psyr_4056at 4839.245 kb on + strand, within Psyr_4056at 4839.245 kb on + strand, within Psyr_4056at 4839.245 kb on + strand, within Psyr_4056at 4839.246 kb on - strand, within Psyr_4056at 4839.594 kb on - strandat 4839.645 kb on + strandat 4839.645 kb on + strandat 4839.645 kb on + strandat 4839.645 kb on + strandat 4839.658 kb on - strandat 4839.766 kb on + strand, within Psyr_4057at 4839.766 kb on + strand, within Psyr_4057at 4839.766 kb on + strand, within Psyr_4057at 4839.782 kb on + strand, within Psyr_4057at 4839.783 kb on - strand, within Psyr_4057at 4839.783 kb on - strand, within Psyr_4057at 4839.882 kb on - strand, within Psyr_4057at 4839.953 kb on - strand, within Psyr_4057at 4840.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 25 ug/ml
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4,837,696 + -0.2
4,837,696 + -0.7
4,837,696 + -0.9
4,837,712 - -1.8
4,837,750 + Psyr_4055 0.12 -1.1
4,837,750 + Psyr_4055 0.12 -0.7
4,838,191 + Psyr_4055 0.64 -0.1
4,838,191 + Psyr_4055 0.64 -0.4
4,838,191 + Psyr_4055 0.64 -1.1
4,838,192 - Psyr_4055 0.64 +0.6
4,838,505 - -1.3
4,838,523 + -0.5
4,838,523 + -0.2
4,838,524 - -0.5
4,838,524 - -1.2
4,838,537 + +0.5
4,838,537 + +0.2
4,838,555 + -0.5
4,838,555 + -0.6
4,838,555 + -0.6
4,838,556 - +0.8
4,838,556 - +2.0
4,838,556 - +0.0
4,838,556 - -0.3
4,838,556 - +1.2
4,838,556 - -0.6
4,838,557 + +0.4
4,838,558 - +0.3
4,838,558 - -0.6
4,838,558 - -0.4
4,838,558 - +0.3
4,838,558 - +0.3
4,838,681 + -0.3
4,838,681 + +0.3
4,838,682 - -0.2
4,838,700 + Psyr_4056 0.10 +0.2
4,838,751 + Psyr_4056 0.15 +0.5
4,838,751 + Psyr_4056 0.15 +0.2
4,838,752 - Psyr_4056 0.15 -2.0
4,838,752 - Psyr_4056 0.15 -2.0
4,838,752 - Psyr_4056 0.15 +1.8
4,838,752 - Psyr_4056 0.15 +0.1
4,838,752 - Psyr_4056 0.15 +0.4
4,838,752 - Psyr_4056 0.15 -1.4
4,838,810 + Psyr_4056 0.21 +0.5
4,838,870 + Psyr_4056 0.27 -0.4
4,838,870 + Psyr_4056 0.27 +0.4
4,838,870 + Psyr_4056 0.27 -0.5
4,838,870 + Psyr_4056 0.27 -0.1
4,838,870 + Psyr_4056 0.27 +0.4
4,838,870 + Psyr_4056 0.27 -0.6
4,838,870 + -0.3
4,838,870 + Psyr_4056 0.27 +1.3
4,838,871 - Psyr_4056 0.27 +0.5
4,838,871 - Psyr_4056 0.27 +0.9
4,838,871 - Psyr_4056 0.27 +1.0
4,838,871 - Psyr_4056 0.27 -0.4
4,838,871 - Psyr_4056 0.27 -1.4
4,838,871 - Psyr_4056 0.27 -1.4
4,838,871 - Psyr_4056 0.27 +0.0
4,838,871 - Psyr_4056 0.27 +0.3
4,838,918 + Psyr_4056 0.32 +0.2
4,838,918 + Psyr_4056 0.32 -0.1
4,838,918 + Psyr_4056 0.32 +0.7
4,838,918 + Psyr_4056 0.32 +0.9
4,838,918 + Psyr_4056 0.32 +0.7
4,838,918 + Psyr_4056 0.32 +2.6
4,838,919 - Psyr_4056 0.32 -0.9
4,838,919 - Psyr_4056 0.32 -0.6
4,838,919 - Psyr_4056 0.32 +0.0
4,838,919 - Psyr_4056 0.32 +1.0
4,839,020 - Psyr_4056 0.42 -0.3
4,839,020 - Psyr_4056 0.42 +1.9
4,839,069 + Psyr_4056 0.47 -0.0
4,839,069 + Psyr_4056 0.47 +0.2
4,839,069 + Psyr_4056 0.47 +0.3
4,839,069 + Psyr_4056 0.47 +0.1
4,839,069 + Psyr_4056 0.47 +1.0
4,839,069 + Psyr_4056 0.47 -0.3
4,839,069 + Psyr_4056 0.47 +1.0
4,839,069 + Psyr_4056 0.47 +0.0
4,839,069 + Psyr_4056 0.47 +1.0
4,839,069 + Psyr_4056 0.47 +1.2
4,839,069 + Psyr_4056 0.47 +0.5
4,839,070 - Psyr_4056 0.47 +0.0
4,839,070 - Psyr_4056 0.47 +0.3
4,839,070 - Psyr_4056 0.47 +0.1
4,839,070 - Psyr_4056 0.47 -0.2
4,839,070 - Psyr_4056 0.47 +0.8
4,839,070 - Psyr_4056 0.47 -0.9
4,839,070 - Psyr_4056 0.47 +0.5
4,839,164 + Psyr_4056 0.57 -1.1
4,839,164 + Psyr_4056 0.57 +1.4
4,839,164 + Psyr_4056 0.57 +0.1
4,839,165 - Psyr_4056 0.57 +0.5
4,839,165 - Psyr_4056 0.57 -0.1
4,839,165 - Psyr_4056 0.57 -0.2
4,839,165 - Psyr_4056 0.57 -0.4
4,839,165 - Psyr_4056 0.57 +0.0
4,839,179 + Psyr_4056 0.58 +1.0
4,839,245 + Psyr_4056 0.65 -0.1
4,839,245 + Psyr_4056 0.65 +1.1
4,839,245 + Psyr_4056 0.65 -1.0
4,839,246 - Psyr_4056 0.65 -0.7
4,839,594 - -0.7
4,839,645 + -0.7
4,839,645 + +0.3
4,839,645 + -1.2
4,839,645 + +0.4
4,839,658 - +0.1
4,839,766 + Psyr_4057 0.11 -0.6
4,839,766 + Psyr_4057 0.11 +0.0
4,839,766 + Psyr_4057 0.11 -1.2
4,839,782 + Psyr_4057 0.13 -1.0
4,839,783 - Psyr_4057 0.13 +1.0
4,839,783 - Psyr_4057 0.13 +0.0
4,839,882 - Psyr_4057 0.24 -2.0
4,839,953 - Psyr_4057 0.32 +0.6
4,840,555 + -0.0

Or see this region's nucleotide sequence